The conserved phylogeny of blood microbiome

被引：11

作者：

Bhattacharyya, Malay ^{[1
]}

Ghosh, Tuhin ^{[1
]}

Shankar, Sujit ^{[1
]}

Tomar, Namrata ^{[2
]}

机构：

[1] Indian Inst Engn Sci & Technol, Dept Informat Technol, Sibpur 711103, Howrah, India

[2] Med Coll Wisconsin, Dept Physiol, Milwaukee, WI 53226 USA

来源：

MOLECULAR PHYLOGENETICS AND EVOLUTION | 2017年 / 109卷

关键词：

Microbiome evolution; Phylogeny; Blood microbiome; Co-existence analysis; EVOLUTION; SEQUENCE; DRIVES;

D O I：

10.1016/j.ympev.2017.02.001

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

The proliferation and intensification of diseases have forced every researcher to take actions for a robust understanding of the organisms. This demands deep knowledge about the cells and tissues in an organ and its entire surroundings, more precisely the microbiome community which involves viruses, bacteria, archaea, among others. They play an important role in the function of our body, and act both as a deterrent as well as shelter for diseases. Therefore, it is pertinent to study the relation within the microbiome in a human body. In this work, we analyze the sequence data provided through the Human Microbiome Project to explore evolutionary relations within blood microbiome. The objective is to analyze the common proteins present in the different microbes in the blood and find their phylogeny. The analysis of the phylogenetic relation between these species provides important insights about the conservedness of phylogeny of blood microbiome. Interestingly, the co-existence of five of those common proteins is observed in human too. (C) 2017 Elsevier Inc. All rights reserved.

引用

页码：404 / 408

页数：5

共 15 条

[1] ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids [J].

Ashkenazy, Haim ;

Erez, Elana ;

Martz, Eric ;

Pupko, Tal ;

Ben-Tal, Nir .

NUCLEIC ACIDS RESEARCH, 2010, 38 :W529-W533

[2]

Chadwick D.J., 1997, Antibiotic resistance: Origins, evolution, selection and spread

[3] TRANSPOSABLE ELEMENTS AS MUTATOR GENES IN EVOLUTION [J].

CHAO, L ;

VARGAS, C ;

SPEAR, BB ;

COX, EC .

NATURE, 1983, 303 (5918) :633-635

[4] The changing face of asthma and its relation with microbes [J].

Earl, Chris S. ;

An, Shi-qi ;

Ryan, Robert P. .

TRENDS IN MICROBIOLOGY, 2015, 23 (07) :408-418

[5] Microbial Co-occurrence Relationships in the Human Microbiome [J].

Faust, Karoline ;

Sathirapongsasuti, J. Fah ;

Izard, Jacques ;

Segata, Nicola ;

Gevers, Dirk ;

Raes, Jeroen ;

Huttenhower, Curtis .

PLOS COMPUTATIONAL BIOLOGY, 2012, 8 (07)

[6] Evaluation of different partial 16S rRNA gene sequence regions for phylogenetic analysis of microbiomes [J].

Kim, Minseok ;

Morrison, Mark ;

Yu, Zhongtang .

JOURNAL OF MICROBIOLOGICAL METHODS, 2011, 84 (01) :81-87

[7] Highly variable mutation rates in commensal and pathogenic Escherichia coli [J].

Matic, I ;

Radman, M ;

Taddei, F ;

Picard, B ;

Doit, C ;

Bingen, E ;

Denamur, E ;

Elion, J .

SCIENCE, 1997, 277 (5333) :1833-1834

[8] Context and the human microbiome [J].

McDonald, Daniel ;

Birmingham, Amanda ;

Knight, Rob .

MICROBIOME, 2015, 3 :52

[9] Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans [J].

Muegge, Brian D. ;

Kuczynski, Justin ;

Knights, Dan ;

Clemente, Jose C. ;

Gonzalez, Antonio ;

Fontana, Luigi ;

Henrissat, Bernard ;

Knight, Rob ;

Gordon, Jeffrey I. .

SCIENCE, 2011, 332 (6032) :970-974

[10] The dormant blood microbiome in chronic, inflammatory diseases [J].

Potgieter, Marnie ;

Bester, Janette ;

Kell, Douglas B. ;

Pretorius, Etheresia .

FEMS MICROBIOLOGY REVIEWS, 2015, 39 (04) :567-591

← 1 2 →