Molecular Rift: Virtual Reality for Drug Designers

被引:82
作者
Norrby, Magnus [1 ,2 ]
Grebner, Christoph [1 ]
Eriksson, Joakim [3 ]
Bostrom, Jonas [1 ]
机构
[1] AstraZeneca, CVMD iMed, Dept Med Chem, S-43183 Molndal, Sweden
[2] Lund Univ, Dept Comp Sci, S-22362 Lund, Sweden
[3] Lund Univ, Dept Design Sci, S-22362 Lund, Sweden
关键词
Helmet mounted displays;
D O I
10.1021/acs.jcim.5b00544
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
Recent advances in interaction design have created new ways to use computers. One example is the ability to create enhanced 3D environments that simulate physical presence in the real world a virtual reality. This is relevant to drug discovery since molecular models are frequently used to obtain deeper understandings of, say, ligand protein complexes. We have developed a tool (Molecular Rift), which creates a virtual reality environment steered with hand movements. Oculus Rift, a head-mounted display, is used to create the virtual settings. The program is controlled by gesture-recognition, using the gaming sensor MS Kinect v2, eliminating the need for standard input devices. The Open Babel toolkit was integrated to provide access to powerful cheminformatics functions. Molecular Rift was developed with a focus on usability, including iterative test-group evaluations. We conclude with reflections on virtual reality's future capabilities in chemistry and education. Molecular Rift is open source and can be downloaded from GitHub.
引用
收藏
页码:2475 / 2484
页数:10
相关论文
共 24 条
[1]  
Alnowami M., 2014, LIFE SCI J, V11, P514
[2]   The process of structure-based drug design [J].
Anderson, AC .
CHEMISTRY & BIOLOGY, 2003, 10 (09) :787-797
[3]   The Protein Data Bank [J].
Berman, HM ;
Westbrook, J ;
Feng, Z ;
Gilliland, G ;
Bhat, TN ;
Weissig, H ;
Shindyalov, IN ;
Bourne, PE .
NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :235-242
[4]   PROTEIN DATA BANK - COMPUTER-BASED ARCHIVAL FILE FOR MACROMOLECULAR STRUCTURES [J].
BERNSTEIN, FC ;
KOETZLE, TF ;
WILLIAMS, GJB ;
MEYER, EF ;
BRICE, MD ;
RODGERS, JR ;
KENNARD, O ;
SHIMANOUCHI, T ;
TASUMI, M .
EUROPEAN JOURNAL OF BIOCHEMISTRY, 1977, 80 (02) :319-324
[5]   VAN DER WAALS VOLUMES + RADII [J].
BONDI, A .
JOURNAL OF PHYSICAL CHEMISTRY, 1964, 68 (03) :441-+
[6]  
Bostrom J., WORLD NEW DRUGS PLAY
[7]   Scaffold hopping, synthesis and structure-activity relationships of 5,6-diaryl-pyrazine-2-amide derivatives:: A novel series of CB1 receptor antagonists [J].
Bostrom, Jonas ;
Berggren, Kristina ;
Elebring, Thomas ;
Greasley, Peter J. ;
Wilstermann, Michael .
BIOORGANIC & MEDICINAL CHEMISTRY, 2007, 15 (12) :4077-4084
[8]  
Broman K., 2011, NorDiNa: Nordic Studies in Science Education, V7, P43, DOI [DOI 10.5617/nordina.245, 10.5617/nordina.245, DOI 10.5617/NORDINA.245]
[9]  
Eilks I., 2015, Relevant Chemistry Education: From Theory to Practice, P1, DOI [DOI 10.1007/978-94-6300-175-51, 10.1007/978-94-6300-175-51]
[10]  
Feldmann R. J., 1980, TAMS TEACHING AIDS M