The emerging field of geogenomics: Constraining geological problems with genetic data

被引:67
作者
Baker, Paul A. [1 ,2 ]
Fritz, Sherilyn C. [3 ,4 ]
Dick, Christopher W. [5 ]
Eckert, Andrew J. [6 ]
Horton, Brian K. [7 ]
Manzoni, Stefano [8 ]
Ribas, Camila C. [9 ]
Garzione, Carmala N. [10 ]
Battisti, David S. [11 ]
机构
[1] Duke Univ, Div Earth & Ocean Sci, Durham, NC 27708 USA
[2] Environm Duke Univ, Nicholas Sch, Durham, NC 27708 USA
[3] Univ Nebraska, Dept Earth & Atmospher Sci, Lincoln, NE 68588 USA
[4] Univ Nebraska, Sch Biol Sci, Lincoln, NE 68588 USA
[5] Univ Michigan, Dept Ecol & Evolutionary Biol, Ann Arbor, MI 48109 USA
[6] Virginia Commonwealth Univ, Dept Biol, Richmond, VA 23284 USA
[7] Univ Texas Austin, Dept Geol Sci, Austin, TX 78712 USA
[8] Stockholm Univ, Dept Phys Geog & Quaternary Geol, SE-10691 Stockholm, Sweden
[9] Inst Natl Pesquisas Amazonia, BR-69060000 Manaus, Amazonas, Brazil
[10] Univ Rochester, Dept Earth & Environm Sci, Rochester, NY 14627 USA
[11] Univ Washington, Dept Atmospher Sci, Seattle, WA 98195 USA
基金
美国国家科学基金会;
关键词
Genomics; Molecular phylogenetics; Neotropics; Phylogeography; Andes; Amazon; LATE MIOCENE RISE; SURFACE UPLIFT; ANDEAN PLATEAU; CLIMATE-CHANGE; MOLECULAR PHYLOGENETICS; ISOTOPE EVIDENCE; NORTHERN ANDES; SOUTH-AMERICA; AMAZON RIVER; PUNA PLATEAU;
D O I
10.1016/j.earscirev.2014.04.001
中图分类号
P [天文学、地球科学];
学科分类号
07 ;
摘要
The development of a genomics-derived discipline within geology is timely, as a result of major advances in acquiring and processing geologically relevant genetic data. This paper articulates the emerging field of "geogenomics", which involves the use of large-scale genetic data to constrain geological hypotheses. The paper introduces geogenomics and discusses how hypotheses can be addressed through collaboration between geologists and evolutionary biologists. As an example, geogenomic methods are applied to evaluate competing hypotheses regarding the timing of the Andean uplift, the closure of the Isthmus of Panama, the onset of trans-Amazon drainage, and Quaternary climate variation in the Neotropics. (C) 2014 Elsevier B.V. All rights reserved.
引用
收藏
页码:38 / 47
页数:10
相关论文
共 121 条
[1]   The evolution of the Altiplano-Puna plateau of the Central Andes [J].
Allmendinger, RW ;
Jordan, TE ;
Kay, SM ;
Isacks, BL .
ANNUAL REVIEW OF EARTH AND PLANETARY SCIENCES, 1997, 25 :139-174
[2]  
[Anonymous], 1987, Science, Philosophy, and Human Behavior in the Soviet Union
[3]  
Avise J. C., 2000, PHYLOGEOGRAPHY HIST, DOI DOI 10.2307/J.CTV1NZFGJ7
[4]   Testing geological models of evolution of the Isthmus of Panama in a phylogenetic framework [J].
Bacon, Christine D. ;
Mora, Andres ;
Wagner, Warren L. ;
Jaramillo, Carlos A. .
BOTANICAL JOURNAL OF THE LINNEAN SOCIETY, 2013, 171 (01) :287-300
[5]   The history of South American tropical precipitation for the past 25,000 years [J].
Baker, PA ;
Seltzer, GO ;
Fritz, SC ;
Dunbar, RB ;
Grove, MJ ;
Tapia, PM ;
Cross, SL ;
Rowe, HD ;
Broda, JP .
SCIENCE, 2001, 291 (5504) :640-643
[6]  
BATES JM, 1994, AUK, V111, P507
[7]  
Beaumont MA, 2002, GENETICS, V162, P2025
[8]   The nature of orogenic crust in the central Andes [J].
Beck, SL ;
Zandt, G .
JOURNAL OF GEOPHYSICAL RESEARCH-SOLID EARTH, 2002, 107 (B10)
[9]   Neotropical refugia [J].
Bennett, K. D. ;
Bhagwat, S. A. ;
Willis, K. J. .
HOLOCENE, 2012, 22 (11) :1207-1214
[10]   Divergence in Zygodontomys (Rodentia: Sigmodontinae) and Distribution of Amazonian Savannas [J].
Bonvicino, Cibele R. ;
Goncalves, Pablo R. ;
de Oliveira, Joao A. ;
de Oliveira, Luiz Flamarion B. ;
Mattevi, Margarete S. .
JOURNAL OF HEREDITY, 2009, 100 (03) :322-328