The impact of chromatin dynamics on plant light responses and circadian clock function

被引:47
作者
Barneche, Fredy [1 ,2 ,3 ]
Malapeira, Jordi [4 ]
Mas, Paloma [4 ]
机构
[1] Ecole Normale Super, Environm & Evolutionary Genom Sect, Inst Biol, IBENS, F-75005 Paris, France
[2] INSERM, U1024, F-75005 Paris, France
[3] CNRS, UMR 8197, F-75005 Paris, France
[4] Consortium CSIC IRTA UAB UB, CRAG, Barcelona 08193, Spain
关键词
Chromatin; circadian clock; gene expression; histone modifications; light signalling; plant; HISTONE H2B MONOUBIQUITINATION; SHADE-AVOIDANCE-RESPONSE; TRANSCRIPTION FACTOR HY5; FLOWERING-LOCUS-C; ARABIDOPSIS-THALIANA; GENE-EXPRESSION; UV-B; DNA METHYLATION; MEDIATED DEVELOPMENT; EPIGENETIC VARIATION;
D O I
10.1093/jxb/eru011
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Research on the functional properties of nucleosome structure and composition dynamics has revealed that chromatin-level regulation is an essential component of light signalling and clock function in plants, two processes that rely extensively on transcriptional controls. In particular, several types of histone post-translational modifications and chromatin-bound factors act sequentially or in combination to establish transcriptional patterns and to fine-tune the transcript abundance of a large repertoire of light-responsive genes and clock components. Cytogenetic approaches have also identified light-induced higher-order chromatin changes that dynamically organize the condensation of chromosomal domains into sub-nuclear foci containing silenced repeat elements. In this review, we report recently identified molecular actors that establish chromatin state dynamics in response to light signals such as photoperiod, intensity, and spectral quality. We also highlight the chromatin-dependent mechanisms that contribute to the 24-h circadian gene expression and its impact on plant physiology and development. The commonalities and contrasts of light-and clock-associated chromatin-based mechanisms are discussed, with particular emphasis on their impact on the selective regulation and rapid modulation of responsive genes.
引用
收藏
页码:2895 / 2913
页数:19
相关论文
共 204 条
[41]   Regulation of the floral repressor gene FLC: the complexity of transcription in a chromatin context [J].
Crevillen, Pedro ;
Dean, Caroline .
CURRENT OPINION IN PLANT BIOLOGY, 2011, 14 (01) :38-44
[42]   Random GFP::cDNA fusions enable visualization of subcellular structures in cells of Arabidopsis at a high frequency [J].
Cutler, SR ;
Ehrhardt, DW ;
Griffitts, JS ;
Somerville, CR .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 97 (07) :3718-3723
[43]   A genomic analysis of the shade avoidance response in Arabidopsis [J].
Devlin, PF ;
Yanovsky, MJ ;
Kay, SA .
PLANT PHYSIOLOGY, 2003, 133 (04) :1617-1629
[44]   Cryptochromes are required for phytochrome signaling to the circadian clock but not for rhythmicity [J].
Devlin, PF ;
Kay, SA .
PLANT CELL, 2000, 12 (12) :2499-2509
[45]   Temporal Repression of Core Circadian Genes Is Mediated through EARLY FLOWERING 3 in Arabidopsis [J].
Dixon, Laura E. ;
Knox, Kirsten ;
Kozma-Bognar, Laszlo ;
Southern, Megan M. ;
Pokhilko, Alexandra ;
Millar, Andrew J. .
CURRENT BIOLOGY, 2011, 21 (02) :120-125
[46]   Circadian Control of Global Gene Expression Patterns [J].
Doherty, Colleen J. ;
Kay, Steve A. .
ANNUAL REVIEW OF GENETICS, VOL 44, 2010, 44 :419-444
[47]   Circadian regulator CLOCK is a histone acetyltransferase [J].
Doi, Masao ;
Hirayama, Jun ;
Sassone-Corsi, Paolo .
CELL, 2006, 125 (03) :497-508
[48]   The ELF4 gene controls circadian rhythms and flowering time in Arabidopsis thaliana [J].
Doyle, MR ;
Davis, SJ ;
Bastow, RM ;
McWatters, HG ;
Kozma-Bognár, L ;
Nagy, F ;
Millar, AJ ;
Amasino, RM .
NATURE, 2002, 419 (6902) :74-77
[49]   Erasure of histone acetylation by Arabidopsis HDA6 mediates large-scale gene silencing in nucleolar dominance [J].
Earley, Keith ;
Lawrence, Richard J. ;
Pontes, Olga ;
Reuther, Rachel ;
Enciso, Angel J. ;
Silva, Manuela ;
Neves, Nuno ;
Gross, Michael ;
Viegas, Wanda ;
Pikaard, Craig S. .
GENES & DEVELOPMENT, 2006, 20 (10) :1283-1293
[50]   In vitro specificities of Arabidopsis co-activator histone acetyltransferases:: implications for histone hyperacetylation in gene activation [J].
Earley, Keith W. ;
Shook, Molly S. ;
Brower-Toland, Brent ;
Hicks, Leslie ;
Pikaard, Craig S. .
PLANT JOURNAL, 2007, 52 (04) :615-626