The impact of chromatin dynamics on plant light responses and circadian clock function

被引:47
作者
Barneche, Fredy [1 ,2 ,3 ]
Malapeira, Jordi [4 ]
Mas, Paloma [4 ]
机构
[1] Ecole Normale Super, Environm & Evolutionary Genom Sect, Inst Biol, IBENS, F-75005 Paris, France
[2] INSERM, U1024, F-75005 Paris, France
[3] CNRS, UMR 8197, F-75005 Paris, France
[4] Consortium CSIC IRTA UAB UB, CRAG, Barcelona 08193, Spain
关键词
Chromatin; circadian clock; gene expression; histone modifications; light signalling; plant; HISTONE H2B MONOUBIQUITINATION; SHADE-AVOIDANCE-RESPONSE; TRANSCRIPTION FACTOR HY5; FLOWERING-LOCUS-C; ARABIDOPSIS-THALIANA; GENE-EXPRESSION; UV-B; DNA METHYLATION; MEDIATED DEVELOPMENT; EPIGENETIC VARIATION;
D O I
10.1093/jxb/eru011
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Research on the functional properties of nucleosome structure and composition dynamics has revealed that chromatin-level regulation is an essential component of light signalling and clock function in plants, two processes that rely extensively on transcriptional controls. In particular, several types of histone post-translational modifications and chromatin-bound factors act sequentially or in combination to establish transcriptional patterns and to fine-tune the transcript abundance of a large repertoire of light-responsive genes and clock components. Cytogenetic approaches have also identified light-induced higher-order chromatin changes that dynamically organize the condensation of chromosomal domains into sub-nuclear foci containing silenced repeat elements. In this review, we report recently identified molecular actors that establish chromatin state dynamics in response to light signals such as photoperiod, intensity, and spectral quality. We also highlight the chromatin-dependent mechanisms that contribute to the 24-h circadian gene expression and its impact on plant physiology and development. The commonalities and contrasts of light-and clock-associated chromatin-based mechanisms are discussed, with particular emphasis on their impact on the selective regulation and rapid modulation of responsive genes.
引用
收藏
页码:2895 / 2913
页数:19
相关论文
共 204 条
  • [1] HY4 GENE OF A-THALIANA ENCODES A PROTEIN WITH CHARACTERISTICS OF A BLUE-LIGHT PHOTORECEPTOR
    AHMAD, M
    CASHMORE, AR
    [J]. NATURE, 1993, 366 (6451) : 162 - 166
  • [2] Reciprocal regulation between TOC1 and LHY/CCA1 within the Arabidopsis circadian clock
    Alabadí, D
    Oyama, T
    Yanovsky, MJ
    Harmon, FG
    Más, P
    Kay, SA
    [J]. SCIENCE, 2001, 293 (5531) : 880 - 883
  • [3] Subcellular Localization of Class II HDAs in Arabidopsis thaliana: Nucleocytoplasmic Shuttling of HDA15 Is Driven by Light
    Alinsug, Malona V.
    Chen, Fang Fang
    Luo, Ming
    Tai, Ready
    Jiang, Liwen
    Wu, Keqiang
    [J]. PLOS ONE, 2012, 7 (02):
  • [4] Epigenetic aspects of differentiation
    Arney, KL
    Fisher, AG
    [J]. JOURNAL OF CELL SCIENCE, 2004, 117 (19) : 4355 - 4363
  • [5] SIRT1 regulates circadian clock gene expression through PER2 deacetylation
    Asher, Gad
    Gatfield, David
    Stratmann, Markus
    Reinke, Hans
    Dibner, Charna
    Kreppel, Florian
    Mostoslavsky, Raul
    Alt, Frederick W.
    Schibler, Ueli
    [J]. CELL, 2008, 134 (02) : 317 - 328
  • [6] F-Box Proteins FKF1 and LKP2 Act in Concert with ZEITLUPE to Control Arabidopsis Clock Progression
    Baudry, Antoine
    Ito, Shogo
    Song, Young Hun
    Strait, Alexander A.
    Kiba, Takatoshi
    Lu, Sheen
    Henriques, Rossana
    Pruneda-Paz, Jose L.
    Chua, Nam-Hai
    Tobin, Elaine M.
    Kay, Steve A.
    Imaizumi, Takato
    [J]. PLANT CELL, 2010, 22 (03) : 606 - 622
  • [7] FACT facilitates transcription-dependent nucleosome alteration
    Belotserkovskaya, R
    Oh, S
    Bondarenko, VA
    Orphanides, G
    Studitsky, VM
    Reinberg, D
    [J]. SCIENCE, 2003, 301 (5636) : 1090 - 1093
  • [8] Genome-scale Arabidopsis promoter array identifies targets of the histone acetyltransferase GCN5
    Benhamed, Moussa
    Martin-Magniette, Marie-Laure
    Taconnat, Ludivine
    Bitton, Frederique
    Servet, Caroline
    De Clercq, Rebecca
    De Meyer, Bjorn
    Buysschaert, Caroline
    Rombauts, Stephane
    Villarroel, Raimundo
    Aubourg, Sebastien
    Beynon, Jim
    Bhalerao, Rishikesh P.
    Coupland, George
    Gruissem, Wilhelm
    Menke, Frank L. H.
    Weisshaar, Bernd
    Renou, Jean-Pierre
    Zhou, Dao-Xiu
    Hilson, Pierre
    [J]. PLANT JOURNAL, 2008, 56 (03) : 493 - 504
  • [9] Arabidopsis GCN5, HD1, and TAF1/HAF2 interact to regulate histone acetylation required for light-responsive gene expression
    Benhamed, Moussa
    Bertrand, Claire
    Servet, Caroline
    Zhou, Dao-Xiu
    [J]. PLANT CELL, 2006, 18 (11) : 2893 - 2903
  • [10] Heterochromatin dynamics during developmental transitions in Arabidopsis - a focus on ribosomal DNA loci
    Benoit, Matthias
    Layat, Elodie
    Tourmente, Sylvette
    Probst, Aline V.
    [J]. GENE, 2013, 526 (01) : 39 - 45