Serum Glycan Signatures of Gastric Cancer

被引:49
作者
Ozcan, Sureyya [1 ]
Barkauskas, Donald A. [7 ]
Ruhaak, L. Renee [1 ]
Torres, Javier [8 ]
Cooke, Cara L. [2 ,3 ]
An, Hyun Joo [9 ]
Hua, Serenus [9 ]
Williams, Cynthia C. [1 ]
Dimapasoc, Lauren M. [1 ]
Kim, Jae Han [10 ]
Camorlinga-Ponce, Margarita [8 ]
Rocke, David [4 ,5 ]
Lebrilla, Carlito B. [1 ,6 ]
Solnick, Jay V. [2 ,3 ]
机构
[1] Univ Calif Davis, Sch Med, Dept Chem, Ctr Comparat Med, Davis, CA 95616 USA
[2] Univ Calif Davis, Sch Med, Dept Med, Ctr Comparat Med, Davis, CA 95616 USA
[3] Univ Calif Davis, Sch Med, Dept Microbiol & Immunol, Ctr Comparat Med, Davis, CA 95616 USA
[4] Univ Calif Davis, Dept Biomed Engn, Davis, CA 95616 USA
[5] Univ Calif Davis, Dept Publ Hlth Sci, Div Biostat, Davis, CA 95616 USA
[6] Univ Calif Davis, Dept Biochem & Mol Med, Davis, CA 95616 USA
[7] Univ So Calif, Dept Prevent Med, Los Angeles, CA 90089 USA
[8] Inst Mexicano Seguro Social, Infect Dis Res Unit, Mexico City, DF, Mexico
[9] Chungnam Natl Univ, Grad Sch Analyt Sci & Technol, Taejon, South Korea
[10] Chungnam Natl Univ, Dept Food Nutr, Taejon, South Korea
关键词
HELICOBACTER-PYLORI INFECTION; MASS-SPECTROMETRY; OVARIAN-CANCER; N-GLYCANS; POTENTIAL BIOMARKERS; ATROPHIC GASTRITIS; GLYCOMICS ANALYSIS; LINKED GLYCANS; DISCOVERY; PERFORMANCE;
D O I
10.1158/1940-6207.CAPR-13-0235
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Glycomics, a comprehensive study of glycans expressed in biologic systems, is emerging as a simple yet highly sensitive diagnostic tool for disease onset and progression. This study aimed to use glycomics to investigate glycan markers that would differentiate patients with gastric cancer from those with nonatrophic gastritis. Patients with duodenal ulcer were also included because they are thought to represent a biologically different response to infection with Helicobacter pylori, a bacterial infection that can cause either gastric cancer or duodenal ulcer. We collected 72 serum samples from patients in Mexico City that presented with nonatrophic gastritis, duodenal ulcer, or gastric cancer. N-glycans were released from serum samples using the generic method with PNGase F and were analyzed by matrix-assisted laser desorption/ionization Fourier transform-ion cyclotron resonance mass spectrometry. The corresponding glycan compositions were calculated based on accurate mass. ANOVA-based statistical analysis was performed to identify potential markers for each subgroup. Nineteen glycans were significantly different among the diagnostic groups. Generally, decreased levels of high-mannose-type glycans, glycans with one complex type antenna, bigalactosylated biantennary glycans, and increased levels of nongalactosylated biantennary glycans were observed in gastric cancer cases. Altered levels of serum glycans were also observed in duodenal ulcer, but differences were generally in the same direction as gastric cancer. Serum glycan profiles may provide biomarkers to differentiate gastric cancer cases from controls with nonatrophic gastritis. Further studies will be needed to validate these findings as biomarkers and identify the role of protein glycosylation in gastric cancer pathology. (C)2013 AACR.
引用
收藏
页码:226 / 235
页数:10
相关论文
共 74 条
  • [11] Barkauskas D., 2012, FTICRMS: programs for analyzing fourier transform-ion cyclotron resonance mass spectrometry data
  • [12] A general-purpose baseline estimation algorithm for spectroscopic data
    Barkauskas, Donald A.
    Rocke, David M.
    [J]. ANALYTICA CHIMICA ACTA, 2010, 657 (02) : 191 - 197
  • [13] Analysis of MALDI FT-ICR mass spectrometry data: A time series approach
    Barkauskas, Donald A.
    Kronewitter, Scott R.
    Lebrilla, Carlito B.
    Rocke, David M.
    [J]. ANALYTICA CHIMICA ACTA, 2009, 648 (02) : 207 - 214
  • [14] Detecting glycan cancer biomarkers in serum samples using MALDI FT-ICR mass spectrometry data
    Barkauskas, Donald A.
    An, Hyun Joo
    Kronewitter, Scott R.
    de Leoz, Maria Lorna
    Chew, Helen K.
    de Vere White, Ralph W.
    Leiserowitz, Gary S.
    Miyamoto, Suzanne
    Lebrilla, Carlito B.
    Rocke, David M.
    [J]. BIOINFORMATICS, 2009, 25 (02) : 251 - 257
  • [15] CONTROLLING THE FALSE DISCOVERY RATE - A PRACTICAL AND POWERFUL APPROACH TO MULTIPLE TESTING
    BENJAMINI, Y
    HOCHBERG, Y
    [J]. JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY, 1995, 57 (01) : 289 - 300
  • [16] ESSAY What are the consequences of the disappearing human microbiota?
    Blaser, Martin J.
    Falkow, Stanley
    [J]. NATURE REVIEWS MICROBIOLOGY, 2009, 7 (12) : 887 - 894
  • [17] Glycomic and Glycoproteomic Analysis of Serum from Patients with Stomach Cancer Reveals Potential Markers Arising from Host Defense Response Mechanisms
    Bones, Jonathan
    Byrne, Jennifer C.
    O'Donoghue, Niaobh
    McManus, Ciara
    Scaife, Caitriona
    Boissin, Herve
    Nastase, Anca
    Rudd, Pauline M.
    [J]. JOURNAL OF PROTEOME RESEARCH, 2011, 10 (03) : 1246 - 1265
  • [18] Ultra Performance Liquid Chromatographic Profiling of Serum N-Glycans for Fast and Efficient Identification of Cancer Associated Alterations in Glycosylation
    Bones, Jonathan
    Mittermayr, Stefan
    O'Donoghue, Niaobh
    Guttman, Andras
    Rudd, Pauline M.
    [J]. ANALYTICAL CHEMISTRY, 2010, 82 (24) : 10208 - 10215
  • [19] Age and severity of mucosal lesions influence the performance of serologic markers in Helicobacter pylori-associated gastroduodenal Pathologies
    Camorlinga-Ponce, Margarita
    Flores-Luna, Lourdes
    Lazcano-Ponce, Eduardo
    Herrero, Rolando
    Bernal-Sahagun, Fernando
    Abdo-Francis, Juan Miguel
    Aguirre-Garcia, Jesus
    Munoz, Nubia
    Torres, Javier
    [J]. CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION, 2008, 17 (09) : 2498 - 2504
  • [20] Alkaline degradation of oligosaccharides coupled with matrix-assisted laser desorption/ionization Fourier transform mass spectrometry: A method for sequencing oligosaccharides
    Cancilla, MT
    Penn, SG
    Lebrilla, CB
    [J]. ANALYTICAL CHEMISTRY, 1998, 70 (04) : 663 - 672