Hypoxia and Chromatin: A Focus on Transcriptional Repression Mechanisms

被引:39
作者
Batie, Michael [1 ]
del Peso, Luis [2 ]
Rocha, Sonia [1 ]
机构
[1] Univ Liverpool, Inst Integrat Biol, Dept Biochem, Crown St, Liverpool L697ZB, Merseyside, England
[2] Autonomous Madrid Univ, Inst Biomed Res, Dept Biochem, Arturo Duperier 4, Madrid 28029, Spain
基金
英国惠康基金;
关键词
hypoxia; chromatin; transcriptional repression; repressor Complexes; JmjC; histone methylation; HIF; INDUCIBLE FACTOR-I; HIF-BINDING SITES; GENE-EXPRESSION; EPIGENETIC REGULATION; CELLULAR-RESPONSE; BREAST-CANCER; SACCHAROMYCES-CEREVISIAE; HISTONE DEMETHYLASES; DNA METHYLATION; FLIM-FRET;
D O I
10.3390/biomedicines6020047
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Hypoxia or reduced oxygen availability has been studied extensively for its ability to activate specific genes. Hypoxia-induced gene expression is mediated by the HIF transcription factors, but not exclusively so. Despite the extensive knowledge about how hypoxia activates genes, much less is known about how hypoxia promotes gene repression. In this review, we discuss the potential mechanisms underlying hypoxia-induced transcriptional repression responses. We highlight HIF-dependent and independent mechanisms as well as the potential roles of dioxygenases with functions at the nucleosome and DNA level. Lastly, we discuss recent evidence regarding the involvement of transcriptional repressor complexes in hypoxia.
引用
收藏
页数:19
相关论文
共 134 条
[41]   BRD7, a Novel PBAF-specific SWI/SNF Subunit, Is Required for Target Gene Activation and Repression in Embryonic Stem Cells [J].
Kaeser, Matthias D. ;
Aslanian, Aaron ;
Dong, Meng-Qiu ;
Yates, John R., III ;
Emerson, Beverly M. .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2008, 283 (47) :32254-32263
[42]   Requirement for PBAF in Transcriptional Repression and Repair at DNA Breaks in Actively Transcribed Regions of Chromatin [J].
Kakarougkas, Andreas ;
Ismail, Amani ;
Chambers, Anna L. ;
Riballo, Enriqueta ;
Herbert, Alex D. ;
Kuenzel, Julia ;
Loebrich, Markus ;
Jeggo, Penny A. ;
Downs, Jessica A. .
MOLECULAR CELL, 2014, 55 (05) :723-732
[43]   Two transactivation mechanisms cooperate for the bulk of HIF-1-responsive gene expression [J].
Kasper, LH ;
Boussouar, F ;
Boyd, K ;
Xu, W ;
Biesen, M ;
Rehg, J ;
Baudino, TA ;
Cleveland, JL ;
Brindle, PK .
EMBO JOURNAL, 2005, 24 (22) :3846-3858
[44]   HIF1α and HIF2α: sibling rivalry in hypoxic tumour growth and progression [J].
Keith, Brian ;
Johnson, Randall S. ;
Simon, M. Celeste .
NATURE REVIEWS CANCER, 2012, 12 (01) :9-22
[45]   The physiological roles of histone deacetylase (HDAC) 1 and 2: complex co-stars with multiple leading parts [J].
Kelly, Richard D. W. ;
Cowley, Shaun M. .
BIOCHEMICAL SOCIETY TRANSACTIONS, 2013, 41 :741-749
[46]   SWI/SNF Regulates the Cellular Response to Hypoxia [J].
Kenneth, Niall S. ;
Mudie, Sharon ;
van Uden, Patrick ;
Rocha, Sonia .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2009, 284 (07) :4123-4131
[47]   Regulation of gene expression by hypoxia [J].
Kenneth, Niall Steven ;
Rocha, Sonia .
BIOCHEMICAL JOURNAL, 2008, 414 :19-29
[48]   A transient ischemic environment induces reversible compaction of chromatin [J].
Kirmes, Ina ;
Szczurek, Aleksander ;
Prakash, Kirti ;
Charapitsa, Iryna ;
Heiser, Christina ;
Musheev, Michael ;
Schock, Florian ;
Fornalczyk, Karolina ;
Ma, Dongyu ;
Birk, Udo ;
Cremer, Christoph ;
Reid, George .
GENOME BIOLOGY, 2015, 16
[49]   Bach1 functions as a hypoxia-inducible repressor for the heme oxygenase-1 gene in human cells [J].
Kitamuro, T ;
Takahashi, K ;
Ogawa, K ;
Udono-Fujimori, R ;
Takeda, K ;
Furuyama, K ;
Nakayama, M ;
Sun, JY ;
Fujita, H ;
Hida, W ;
Hattori, T ;
Shirato, K ;
Igarashi, K ;
Shibahara, S .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2003, 278 (11) :9125-9133
[50]   Promoter recruitment of corepressors Sin3 and Cyc8 by activator proteins of the yeast Saccharomyces cerevisiae [J].
Kliewe, Felix ;
Engelhardt, Maike ;
Aref, Rasha ;
Schueller, Hans-Joachim .
CURRENT GENETICS, 2017, 63 (04) :739-750