A Stable Gene Subset Selection Algorithm for Cancers

被引：3

作者：

Xie, Juanying ^{[1
]}

Gao, Hongchao ^{[1
]}

机构：

[1] Shaanxi Normal Univ, Sch Comp Sci, Xian 710062, Peoples R China

来源：

HEALTH INFORMATION SCIENCE (HIS 2015) | 2015年 / 9085卷

关键词：

Gene selection; Gene subsets; K-means; Assemble; Pearson correlation coefficient; Cancers; CLASSIFICATION;

D O I：

10.1007/978-3-319-19156-0_12

中图分类号：

TP18 [人工智能理论];

学科分类号：

081104 ; 0812 ; 0835 ; 1405 ;

摘要：

In order to solve the problem that the selected genes are depend on the train subset in the gene subset selection algorithms, we propose an assemble method to select the discrimination genes for cancers, so that a stable gene subset can be obtained. We randomly extract some proportional samples from train subset and cluster the genes of these samples in K-means, then select a typical gene from each cluster according to its weight estimated in Pearson correlation coefficient between genes and labels. This process is repeated several times. Those genes with high frequencies in the processes are selected to construct the selected gene subset. The power of the proposed method is tested on three very popular gene datasets, and the experimental results demonstrate that the new algorithm proposed in this paper has found the most stable gene subset with the highest classification accuracy.

引用

页码：111 / 122

页数：12

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