Structure of the RNA polymerase domain of E-coli primase

被引:132
作者
Keck, JL
Roche, DD
Lynch, AS
Berger, JM
机构
[1] Univ Calif Berkeley, Dept Mol & Cell Biol, Berkeley, CA 94720 USA
[2] Tularik, S San Francisco, CA 94080 USA
关键词
D O I
10.1126/science.287.5462.2482
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
All cellular organisms use specialized RNA polymerases called "primases" to synthesize RNA primers for the initiation of DNA replication. The high-resolution crystal structure of a primase, comprising the catalytic core of the Escherichia coli DnaG protein, was determined. The core structure contains an active-site architecture that is unrelated to other DNA or RNA polymerase palm folds, but is instead related to the "toprim" fold. On the basis of the structure, it is Likely that DnaG binds nucleic acid in a groove clustered with invariant residues and that DnaG is positioned within the replisome to accept single-stranded DNA directly from the replicative helicase.
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页码:2482 / 2486
页数:5
相关论文
共 40 条
[1]   Toprim - a conserved catalytic domain in type IA and II topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins [J].
Aravind, L ;
Leipe, DD ;
Koonin, EV .
NUCLEIC ACIDS RESEARCH, 1998, 26 (18) :4205-4213
[2]   AMINO-ACID SUBSTITUTION DURING FUNCTIONALLY CONSTRAINED DIVERGENT EVOLUTION OF PROTEIN SEQUENCES [J].
BENNER, SA ;
COHEN, MA ;
GONNET, GH .
PROTEIN ENGINEERING, 1994, 7 (11) :1323-1332
[3]   Structural similarities between topoisomerases that cleave one or both DNA strands [J].
Berger, JM ;
Fass, D ;
Wang, JC ;
Harrison, SC .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1998, 95 (14) :7876-7881
[4]   POSSIBLE ROLE FOR RNA POLYMERASE IN INITIATION OF M13 DNA SYNTHESIS [J].
BRUTLAG, D ;
SCHEKMAN, R ;
KORNBERG, A .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1971, 68 (11) :2826-&
[5]   RIBBONS 2 0 [J].
CARSON, M .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1991, 24 :958-&
[6]  
Cowtan K., 1994, JOINT CCP4 ESF EACBM, V31, P34
[7]   BACTERIOPHAGE-T7 HELICASE-PRIMASE PROTEINS FORM RINGS AROUND SINGLE-STRANDED-DNA THAT SUGGEST A GENERAL STRUCTURE FOR HEXAMERIC HELICASES [J].
EGELMAN, EH ;
YU, X ;
WILD, R ;
HINGORANI, MM ;
PATEL, SS .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1995, 92 (09) :3869-3873
[8]   PROTEIN-STRUCTURE COMPARISON BY ALIGNMENT OF DISTANCE MATRICES [J].
HOLM, L ;
SANDER, C .
JOURNAL OF MOLECULAR BIOLOGY, 1993, 233 (01) :123-138
[9]  
HOLTON J, UNPUB
[10]   ORGANIZATION AND EVOLUTION OF BACTERIAL AND BACTERIOPHAGE PRIMASE HELICASE SYSTEMS [J].
ILYINA, TV ;
GORBALENYA, AE ;
KOONIN, EV .
JOURNAL OF MOLECULAR EVOLUTION, 1992, 34 (04) :351-357