The contribution of culturomics to the repertoire of isolated human bacterial and archaeal species

被引：142

作者：

Bilen, Melhem ^{[1
,2
]}

Dufour, Jean-Charles ^{[3
]}

Lagier, Jean-Christophe ^{[1
]}

Cadoret, Frederic ^{[4
]}

Daoud, Ziad ^{[2
]}

Dubourg, Gregory ^{[1
]}

Raoult, Didier ^{[1
,5
,6
]}

机构：

[1] Aix Marseille Univ, AP HM, IRD, MEPHI,IHU Mediterranee Infect, Marseille, France

[2] Univ Balamand, Fac Med & Med Sci, Clin Microbiol Lab, POB 33, Amioun, Lebanon

[3] Aix Marseille Univ, INSERM, IRD, SESSTIM UMR912, Marseille, France

[4] Hop La Timone, AP HM, BIOSTIC Serv Biostat & Technol Informat & Commun, Marseille, France

[5] King Abdulaziz Univ, King Fahd Med Res Ctr, Special Infect Agents Unit, Jeddah, Saudi Arabia

[6] Aix Marseille Univ, Inst Hosp Univ Mediterranee Infect, IRD, AMU,Microbes Evolut Phylogeny & Infect MEPHI, 19-21 Blvd Jean Moulin, F-13385 Marseille 5, France

来源：

MICROBIOME | 2018年 / 6卷

关键词：

Human microbiota; Culturomics; Gut; Isolation; Prokaryotes; New species; SP NOV; GUT MICROBIOTA; AKKERMANSIA-MUCINIPHILA; BACILLARY ANGIOMATOSIS; HELICOBACTER-PYLORI; DIVERSITY; MICROORGANISMS; IDENTIFICATION; ASSOCIATION; ROCHALIMAEA;

D O I：

10.1186/s40168-018-0485-5

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

After a decade of research and metagenomic analyses, our knowledge of the human microbiota appears to have reached a plateau despite promising results. In many studies, culture has proven to be essential in describing new prokaryotic species and filling metagenomic gaps. In 2015, only 2172 different prokaryotic species were reported to have been isolated at least once from the human body as pathogens or commensals. In this review, we update the previous repertoire by reporting the different species isolated from the human body to date, increasing it by 28% to reach a total of 2776 species associated with human beings. They have been classified into 11 different phyla, mostly the Firmicutes, Proteobacteria, Bacteroidetes, and Actinobacteria. Finally, culturomics contributed up to 66.2% towards updating this repertoire by reporting 400 species, of which 288 were novel. This demonstrates the need to continue the culturing work, which seems essential in order to decipher the hidden human microbial content.

引用

页数：11

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