A comparative computational investigation on the proton and hydride transfer mechanisms of monoamine oxidase using model molecules

被引:36
作者
Atalay, Vildan Enisoglu [1 ]
Erdem, Safiye Sag [2 ]
机构
[1] Uskudar Univ, Dept Bioengn, Fac Engn & Nat Sci, TR-34662 Istanbul, Turkey
[2] Marmara Univ, Dept Chem, Fac Arts & Sci, TR-34722 Istanbul, Turkey
关键词
Monoamine oxidase; Enzyme mechanisms; Flavoenzymes; FAD; Water-assisted mechanism; DFT methods; AMINE-OXIDATION; DENSITY FUNCTIONALS; CATALYZED OXIDATION; BOND-CLEAVAGE; PM6; METHOD; MAO-A; INSIGHTS; BENZYLAMINE; RESOLUTION;
D O I
10.1016/j.compbiolchem.2013.08.007
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Monoamine oxidase (MAO) enzymes regulate the level of neurotransmitters by catalyzing the oxidation of various amine neurotransmitters, such as serotonin, dopamine and norepinephrine. Therefore, they are the important targets for drugs used in the treatment of depression, Parkinson, Alzeimer and other neurodegenerative disorders. Elucidation of MAO-catalyzed amine oxidation will provide new insights into the design of more effective drugs. Various amine oxidation mechanisms have been proposed for MAO so far, such as single electron transfer mechanism, polar nucleophilic mechanism and hydride mechanism. Since amine oxidation reaction of MAO takes place between cofactor flavin and the amine substrate, we focus on the small model structures mimicking flavin and amine substrates so that three model structures were employed. Reactants, transition states and products of the polar nucleophilic (proton transfer), the water-assisted proton transfer and the hydride transfer mechanisms were fully optimized employing various semi-empirical, ab initio and new generation density functional theory (DFT) methods. Activation energy barriers related to these mechanisms revealed that hydride transfer mechanism is more feasible. (C) 2013 Elsevier Ltd. All rights reserved.
引用
收藏
页码:181 / 191
页数:11
相关论文
共 52 条
[1]   The aromatic cage in the active site of monoamine oxidase B:: effect on the structural and electronic properties of bound benzylamine and p-nitrobenzylamine [J].
Akyuz, M. A. ;
Erdem, S. S. ;
Edmondson, D. E. .
JOURNAL OF NEURAL TRANSMISSION, 2007, 114 (06) :693-698
[2]   Computational modeling of the direct hydride transfer mechanism for the MAO catalyzed oxidation of phenethylamine and benzylamine: ONIOM (QM/QM) calculations [J].
Akyuz, Mehmet Ali ;
Erdem, Safiye Sag .
JOURNAL OF NEURAL TRANSMISSION, 2013, 120 (06) :937-945
[3]  
[Anonymous], THESIS MARMARA U
[4]   CDNA CLONING OF HUMAN-LIVER MONOAMINE OXIDASE-A AND OXIDASE-B - MOLECULAR-BASIS OF DIFFERENCES IN ENZYMATIC-PROPERTIES [J].
BACH, AWJ ;
LAN, NC ;
JOHNSON, DL ;
ABELL, CW ;
BEMBENEK, ME ;
KWAN, SW ;
SEEBURG, PH ;
SHIH, JC .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1988, 85 (13) :4934-4938
[5]   DENSITY-FUNCTIONAL THERMOCHEMISTRY .3. THE ROLE OF EXACT EXCHANGE [J].
BECKE, AD .
JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (07) :5648-5652
[6]   Structure of human monoamine oxidase B, a drug target for the treatment of neurological disorders [J].
Binda, C ;
Newton-Vinson, P ;
Hubálek, F ;
Edmondson, DE ;
Mattevi, A .
NATURE STRUCTURAL BIOLOGY, 2002, 9 (01) :22-26
[7]   Insights into the mode of inhibition of human mitochondrial monoamine oxidase B from high-resolution crystal structures [J].
Binda, C ;
Li, M ;
Hubálek, F ;
Restelli, N ;
Edmondson, DE ;
Mattevi, A .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (17) :9750-9755
[8]   Computational Study of the pKa Values of Potential Catalytic Residues in the Active Site of Monoamine Oxidase B [J].
Borstnar, Rok ;
Repic, Matej ;
Kamerlin, Shina Caroline Lynn ;
Vianello, Robert ;
Mavri, Janez .
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2012, 8 (10) :3864-3870
[9]  
Cesura A M, 1992, Prog Drug Res, V38, P171
[10]   Systematic optimization of long-range corrected hybrid density functionals [J].
Chai, Jeng-Da ;
Head-Gordon, Martin .
JOURNAL OF CHEMICAL PHYSICS, 2008, 128 (08)