Whole-Genome Sequencing of Asian Lung Cancers: Second-Hand Smoke Unlikely to Be Responsible for Higher Incidence of Lung Cancer among Asian Never-Smokers

被引:38
作者
Krishnan, Vidhya G. [1 ]
Ebert, Philip J. [2 ]
Ting, Jason C. [2 ]
Lim, Elaine [3 ,4 ,5 ]
Wong, Swee-Seong [2 ]
Teo, Audrey S. M. [1 ]
Yue, Yong G. [2 ]
Chua, Hui-Hoon [1 ]
Ma, Xiwen [2 ]
Loh, Gary S. L. [1 ]
Lin, Yuhao [2 ]
Tan, Joanna H. J. [1 ]
Yu, Kun [2 ]
Zhang, Shenli [6 ]
Reinhard, Christoph [2 ]
Tan, Daniel S. W. [7 ]
Peters, Brock A. [8 ]
Lincoln, Stephen E. [8 ]
Ballinger, Dennis G. [8 ]
Laramie, Jason M. [8 ]
Nilsen, Geoffrey B. [8 ]
Barber, Thomas D. [2 ]
Tan, Patrick [1 ,6 ,9 ,10 ]
Hillmer, Axel M. [1 ]
Ng, Pauline C. [1 ]
机构
[1] Genome Inst Singapore, Singapore 138672, Singapore
[2] Lilly Corp Ctr, Indianapolis, IN USA
[3] Mt Elizabeth Med Ctr, Singapore, Singapore
[4] Tan Tock Seng Hosp, Singapore, Singapore
[5] Natl Univ Singapore Hosp, Singapore 117548, Singapore
[6] Duke NUS Grad Med Sch, Singapore, Singapore
[7] Natl Canc Ctr Singapore, Dept Med Oncol, Singapore, Singapore
[8] Complete Genom Inc, Mountain View, CA USA
[9] Natl Univ Singapore, Yong Loo Lin Sch Med, Canc Sci Inst Singapore, Singapore 117595, Singapore
[10] Natl Canc Ctr, Singapore, Singapore
基金
英国医学研究理事会;
关键词
POLYCYCLIC AROMATIC-HYDROCARBONS; 21 BREAST CANCERS; SOMATIC MUTATIONS; TOBACCO-SMOKE; SIDESTREAM SMOKE; KRAS MUTATIONS; AIR-POLLUTION; DNA-DAMAGE; ADENOCARCINOMA; CHINESE;
D O I
10.1158/0008-5472.CAN-13-3195
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Asian nonsmoking populations have a higher incidence of lung cancer compared with their European counterparts. There is a long-standing hypothesis that the increase of lung cancer in Asian never-smokers is due to environmental factors such as second-hand smoke. We analyzed whole-genome sequencing of 30 Asian lung cancers. Unsupervised clustering of mutational signatures separated the patients into two categories of either all the never-smokers or all the smokers or ex-smokers. In addition, nearly one third of the ex-smokers and smokers classified with the never-smoker-like cluster. The somatic variant profiles of Asian lung cancers were similar to that of European origin with G.C>T.A being predominant in smokers. We found EGFR and TP53 to be the most frequently mutated genes with mutations in 50% and 27% of individuals, respectively. Among the 16 never-smokers, 69% had an EGFR mutation compared with 29% of 14 smokers/ex-smokers. Asian never-smokers had lung cancer signatures distinct from the smoker signature and their mutation profiles were similar to European never-smokers. The profiles of Asian and European smokers are also similar. Taken together, these results suggested that the same mutational mechanisms underlie the etiology for both ethnic groups. Thus, the high incidence of lung cancer in Asian never-smokers seems unlikely to be due to second-hand smoke or other carcinogens that cause oxidative DNA damage, implying that routine EGFR testing is warranted in the Asian population regardless of smoking status. (C)2014 AACR.
引用
收藏
页码:6071 / 6081
页数:11
相关论文
共 42 条
[1]   WNT signalling pathways as therapeutic targets in cancer [J].
Anastas, Jamie N. ;
Moon, Randall T. .
NATURE REVIEWS CANCER, 2013, 13 (01) :11-26
[2]   Genomic Profiles Specific to Patient Ethnicity in Lung Adenocarcinoma [J].
Broet, Philippe ;
Dalmasso, Cyril ;
Tan, Eng Huat ;
Alifano, Marco ;
Zhang, Shenli ;
Wu, Jeanie ;
Lee, Ming Hui ;
Regnard, Jean-Francois ;
Lim, Darren ;
Koong, Heng Nung ;
Agasthian, Thirugnanam ;
Miller, Lance D. ;
Lim, Elaine ;
Camilleri-Broet, Sophie ;
Tan, Patrick .
CLINICAL CANCER RESEARCH, 2011, 17 (11) :3542-3550
[3]  
BRUNNEMANN KD, 1977, CANCER RES, V37, P3218
[4]   EGFR Mutation Testing in Patients with Advanced Non-Small Cell Lung Cancer: A Comprehensive Evaluation of Real-World Practice in an East Asian Tertiary Hospital [J].
Choi, Yoon-La ;
Sun, Jong-Mu ;
Cho, Juhee ;
Rampal, Sanjay ;
Han, Joungho ;
Parasuraman, Bhash ;
Guallar, Eliseo ;
Lee, Genehee ;
Lee, Jeeyun ;
Shim, Young Mog .
PLOS ONE, 2013, 8 (02)
[5]   POLYCYCLIC AROMATIC-HYDROCARBONS AND THEIR DERIVATIVES IN INDOOR AND OUTDOOR AIR IN AN 8-HOME STUDY [J].
CHUANG, JC ;
MACK, GA ;
KUHLMAN, MR ;
WILSON, NK .
ATMOSPHERIC ENVIRONMENT PART B-URBAN ATMOSPHERE, 1991, 25 (03) :369-380
[6]   Somatic mutations affect key pathways in lung adenocarcinoma [J].
Ding, Li ;
Getz, Gad ;
Wheeler, David A. ;
Mardis, Elaine R. ;
McLellan, Michael D. ;
Cibulskis, Kristian ;
Sougnez, Carrie ;
Greulich, Heidi ;
Muzny, Donna M. ;
Morgan, Margaret B. ;
Fulton, Lucinda ;
Fulton, Robert S. ;
Zhang, Qunyuan ;
Wendl, Michael C. ;
Lawrence, Michael S. ;
Larson, David E. ;
Chen, Ken ;
Dooling, David J. ;
Sabo, Aniko ;
Hawes, Alicia C. ;
Shen, Hua ;
Jhangiani, Shalini N. ;
Lewis, Lora R. ;
Hall, Otis ;
Zhu, Yiming ;
Mathew, Tittu ;
Ren, Yanru ;
Yao, Jiqiang ;
Scherer, Steven E. ;
Clerc, Kerstin ;
Metcalf, Ginger A. ;
Ng, Brian ;
Milosavljevic, Aleksandar ;
Gonzalez-Garay, Manuel L. ;
Osborne, John R. ;
Meyer, Rick ;
Shi, Xiaoqi ;
Tang, Yuzhu ;
Koboldt, Daniel C. ;
Lin, Ling ;
Abbott, Rachel ;
Miner, Tracie L. ;
Pohl, Craig ;
Fewell, Ginger ;
Haipek, Carrie ;
Schmidt, Heather ;
Dunford-Shore, Brian H. ;
Kraja, Aldi ;
Crosby, Seth D. ;
Sawyer, Christopher S. .
NATURE, 2008, 455 (7216) :1069-1075
[7]   Human Genome Sequencing Using Unchained Base Reads on Self-Assembling DNA Nanoarrays [J].
Drmanac, Radoje ;
Sparks, Andrew B. ;
Callow, Matthew J. ;
Halpern, Aaron L. ;
Burns, Norman L. ;
Kermani, Bahram G. ;
Carnevali, Paolo ;
Nazarenko, Igor ;
Nilsen, Geoffrey B. ;
Yeung, George ;
Dahl, Fredrik ;
Fernandez, Andres ;
Staker, Bryan ;
Pant, Krishna P. ;
Baccash, Jonathan ;
Borcherding, Adam P. ;
Brownley, Anushka ;
Cedeno, Ryan ;
Chen, Linsu ;
Chernikoff, Dan ;
Cheung, Alex ;
Chirita, Razvan ;
Curson, Benjamin ;
Ebert, Jessica C. ;
Hacker, Coleen R. ;
Hartlage, Robert ;
Hauser, Brian ;
Huang, Steve ;
Jiang, Yuan ;
Karpinchyk, Vitali ;
Koenig, Mark ;
Kong, Calvin ;
Landers, Tom ;
Le, Catherine ;
Liu, Jia ;
McBride, Celeste E. ;
Morenzoni, Matt ;
Morey, Robert E. ;
Mutch, Karl ;
Perazich, Helena ;
Perry, Kimberly ;
Peters, Brock A. ;
Peterson, Joe ;
Pethiyagoda, Charit L. ;
Pothuraju, Kaliprasad ;
Richter, Claudia ;
Rosenbaum, Abraham M. ;
Roy, Shaunak ;
Shafto, Jay ;
Sharanhovich, Uladzislau .
SCIENCE, 2010, 327 (5961) :78-81
[8]   How rapidly does the excess risk of lung cancer decline following quitting smoking? A quantitative review using the negative exponential model [J].
Fry, John S. ;
Lee, Peter N. ;
Forey, Barbara A. ;
Coombs, Katharine J. .
REGULATORY TOXICOLOGY AND PHARMACOLOGY, 2013, 67 (01) :13-26
[9]   Transcription-coupled repair of 8-oxoguanine in human cells and its deficiency in some DNA repair diseases [J].
Gallego, MP ;
Sarasin, A .
BIOCHIMIE, 2003, 85 (11) :1073-1082
[10]   Genomic Landscape of Non-Small Cell Lung Cancer in Smokers and Never-Smokers [J].
Govindan, Ramaswamy ;
Ding, Li ;
Griffith, Malachi ;
Subramanian, Janakiraman ;
Dees, Nathan D. ;
Kanchi, Krishna L. ;
Maher, Christopher A. ;
Fulton, Robert ;
Fulton, Lucinda ;
Wallis, John ;
Chen, Ken ;
Walker, Jason ;
McDonald, Sandra ;
Bose, Ron ;
Ornitz, David ;
Xiong, Donghai ;
You, Ming ;
Dooling, David J. ;
Watson, Mark ;
Mardis, Elaine R. ;
Wilson, Richard K. .
CELL, 2012, 150 (06) :1121-1134