The complete mitochondrial genome of Cervaphis quercus (Insecta: Hemiptera: Aphididae: Greenideinae)

被引：29

作者：

Wang, Yuan ^{[1
,2
]}

Huang, Xiao-Lei ^{[1
]}

Qiao, Ge-Xia ^{[1
]}

机构：

[1] Chinese Acad Sci, Inst Zool, Key Lab Zool Systemat & Evolut, Beijing 100101, Peoples R China

[2] Univ Chinese Acad Sci, Beijing, Peoples R China

来源：

INSECT SCIENCE | 2014年 / 21卷 / 03期

关键词：

aphid; control region; gene arrangement; mitogenome; repeat region; GENUS CERVAPHIS; CONTROL REGION; RNA GENES; SEQUENCE; DNA; ORGANIZATION; LEPIDOPTERA; EVOLUTION; HYMENOPTERA; NUCLEAR;

D O I：

10.1111/1744-7917.12112

中图分类号：

Q96 [昆虫学];

学科分类号：

摘要：

The mitochondrial genome of Cervaphis quercus has been sequenced and annotated. The entire genome of 15 272 bp encodes two ribosomal RNA genes (rrnL and rrnS), 22 transfer RNA (tRNA) genes, 13 protein-coding genes and a control region. The genome has the same gene order as that found in the inferred ancestral insect. Nucleotide composition is highly A+T biased. All protein-coding genes use standard mitochondrial initiation codons. Secondary structure models of the two ribosomal RNA genes of C. quercus are similar to those proposed for other insects. All tRNAs have the classic clover-leaf structure, except for the dihydrouridine (DHU) arm of trnS (AGN), which forms a simple loop. The presence of structural elements in the control region is also discussed, with an emphasis on the possible regulation of replication and/or transcription. Comparison with mitochondrial genomes of other aphid species shows their gene arrangements are conserved; however, the variety of repeat regions in species from a different aphid subfamily, Aphidinae, suggests that they resulted from independent evolutionary events.

引用

页码：278 / 290

页数：13

共 36 条

[1] Unusually Long Palindromes Are Abundant in Mitochondrial Control Regions of Insects and Nematodes [J].

Arunkumar, K. P. ;

Nagaraju, Javaregowda .

PLOS ONE, 2006, 1 (01)

[2] Animal mitochondrial genomes [J].

Boore, JL .

NUCLEIC ACIDS RESEARCH, 1999, 27 (08) :1767-1780

[3] Big trees from little genomes: mitochondrial gene order as a phylogenetic tool [J].

Boore, JL ;

Brown, WM .

CURRENT OPINION IN GENETICS & DEVELOPMENT, 1998, 8 (06) :668-674

[4] The complete mitochondrial genome of the tobacco hornworm, Manduca sexta, (Insecta: Lepidoptera: Sphingidae), and an examination of mitochondrial gene variability within butterflies and moths [J].

Cameron, Stephen L. ;

Whiting, Michael F. .

GENE, 2008, 408 (1-2) :112-123

[5] The Comparative RNA Web (CRW) Site:: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs:: Correction (vol 3, pg 2, 2002) -: art. no. 15 [J].

Cannone, JJ ;

Subramanian, S ;

Schnare, MN ;

Collett, JR ;

D'Souza, LM ;

Du, YS ;

Feng, B ;

Lin, N ;

Madabusi, LV ;

Müller, KM ;

Pande, N ;

Shang, ZD ;

Yu, N ;

Gutell, RR .

BMC BIOINFORMATICS, 2002, 3 (1)

[6] Sequence and organization of the mitochondrial genome of the Chagas disease vector, Triatoma dimidiata [J].

Dotson, EM ;

Beard, CB .

INSECT MOLECULAR BIOLOGY, 2001, 10 (03) :205-215

[7] Characteristics of the nuclear (18S, 5.8S, 28S and 5S) and mitochondrial (12S and 16S) rRNA genes of Apis mellifera (Insecta: Hymenoptera):: structure, organization, and retrotransposable elements [J].

Gillespie, J. J. ;

Johnston, J. S. ;

Cannone, J. J. ;

Gutell, R. R. .

INSECT MOLECULAR BIOLOGY, 2006, 15 (05) :657-686

[8] Comparative and phylogenomic studies on the mitochondrial genomes of Pentatomomorpha (Insecta: Hemiptera: Heteroptera) [J].

Hua, Jimeng ;

Li, Ming ;

Dong, Pengzhi ;

Cui, Ying ;

Xie, Qiang ;

Bu, Wenjun .

BMC GENOMICS, 2008, 9 (1)

[9] Analysis of the complete mitochondrial DNA from Anopheles funestus:: An improved dipteran mitochondrial genome annotation and a temporal dimension of mosquito evolution [J].

Krzywinski, J ;

Grushko, OG ;

Besansky, NJ .

MOLECULAR PHYLOGENETICS AND EVOLUTION, 2006, 39 (02) :417-423

[10] The complete mitochondrial DNA sequence of the horseshoe crab Limulus polyphemus [J].

Lavrov, DV ;

Boore, JL ;

Brown, WM .

MOLECULAR BIOLOGY AND EVOLUTION, 2000, 17 (05) :813-824

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