Computational analysis of N-H•••π interactions and its impact on the structural stability of β-lactamases

被引:15
作者
Lavanya, P. [1 ]
Ramaiah, Sudha [1 ]
Anbarasu, Anand [1 ]
机构
[1] VIT Univ, Sch Biosci & Technol, Med & Biol Comp Lab, Vellore 632014, Tamil Nadu, India
关键词
N-H center dot center dot center dot pi hydrogen bonds; beta-lactamases; Stabilization centers; Conservation; Solvent accessibility; Secondary structure; O HYDROGEN-BONDS; PHYLOGENETIC INFORMATION; STABILIZATION CENTERS; SOLVENT ACCESSIBILITY; FUNCTIONAL REGIONS; GLOBULAR-PROTEINS; ALPHA-HELICES; AMINO-ACIDS; RESISTANCE; IDENTIFICATION;
D O I
10.1016/j.compbiomed.2013.12.008
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Studies on intra-protein interactions provide valuable information on protein conformation. The aim of our study is to explore the functional importance of residues participating in N-H center dot center dot center dot pi hydrogen bonds in maintaining the conformational stability of beta-lactamases. Our results show that most of the residues participating in N-H center dot center dot center dot pi hydrogen bond formation are functionally important and play a significant role in stabilizing the structure with more than one stabilizing region. Our findings reveal the importance of N-H center dot center dot center dot pi hydrogen bonds in the stability of beta-lactamases. These findings may be helpful for medicinal and computational protein chemists working in the area of enzyme mediated antibiotic resistance. (C) 2013 Elsevier Ltd. All rights reserved.
引用
收藏
页码:22 / 28
页数:7
相关论文
共 50 条
[1]   IMPACT OF LOCAL AND NONLOCAL INTERACTIONS ON THERMODYNAMICS AND KINETICS OF PROTEIN-FOLDING [J].
ABKEVICH, VI ;
GUTIN, AM ;
SHAKHNOVICH, EI .
JOURNAL OF MOLECULAR BIOLOGY, 1995, 252 (04) :460-471
[2]   ASAView: Database and tool for solvent accessibility representation in proteins [J].
Ahmad, S ;
Gromiha, M ;
Fawareh, H ;
Sarai, A .
BMC BIOINFORMATICS, 2004, 5 (1)
[3]   Non-classical hydrogen bonds in interleukins: The role of C-H•••O interactions [J].
Anand, Sudha ;
Anbarasu, Anand ;
Sethumadhavan, Rao .
INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 2008, 43 (05) :468-473
[4]  
Anand Sudha, 2008, In Silico Biology, V8, P261
[5]  
Anbarasu A., 2008, OPEN STRUCT BIOL J, V2, P33
[6]   Investigations on C-H• • •π interactions in RNA binding proteins [J].
Anbarasu, Anand ;
Anand, Sudha ;
Babu, M. Madan ;
Sethumadhavan, Rao .
INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 2007, 41 (03) :251-259
[7]   Computation of non-covalent interactions in TNF proteins and interleukins [J].
Anbarasu, Anand ;
Anand, Sudha ;
Mathew, Lazar ;
Rao, Sethumadhavan .
CYTOKINE, 2006, 35 (5-6) :263-269
[8]   ConSurf: An algorithmic tool for the identification of functional regions in proteins by surface mapping of phylogenetic information [J].
Armon, A ;
Graur, D ;
Ben-Tal, N .
JOURNAL OF MOLECULAR BIOLOGY, 2001, 307 (01) :447-463
[9]   Isoniazid and thioacetazone may exhibit antitubercular activity by binding directly with the active site of mycolic acid cyclopropane synthase: Hypothesis based on computational analysis [J].
Banerjee, Dibyajyoti ;
Bhattacharyya, Rajasri .
BIOINFORMATION, 2012, 8 (16) :787-789
[10]   Origin and evolution of the AmpC β-lactamases of Citrobacter freundii [J].
Barlow, M ;
Hall, BG .
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 2002, 46 (05) :1190-1198