Quantitative estimation of pesticide-likeness for agrochemical discovery

被引:71
作者
Avram, Sorin [1 ]
Funar-Timofei, Simona [1 ]
Borota, Ana [1 ]
Chennamaneni, Sridhar Rao [2 ]
Manchala, Anil Kumar [2 ]
Muresan, Sorel [3 ]
机构
[1] Romanian Acad Timisoara, Inst Chem, Dept Computat Chem, Timisoara 300223, Romania
[2] GVK Biosci Pvt Ltd, Hyderabad 500037, Andhra Pradesh, India
[3] Banats Univ Agr Sci & Vet Med, Food Control Dept, Timisoara 300645, Romania
来源
JOURNAL OF CHEMINFORMATICS | 2014年 / 6卷
关键词
Herbicide; Insecticide; Fungicide; Pesticide; Agrochemicals; SAR databases; MOLECULAR-PROPERTIES; DRUG DISCOVERY; LEADS;
D O I
10.1186/s13321-014-0042-6
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Background: The design of chemical libraries, an early step in agrochemical discovery programs, is frequently addressed by means of qualitative physicochemical and/or topological rule-based methods. The aim of this study is to develop quantitative estimates of herbicide- (QEH), insecticide- (QEI), fungicide- (QEF), and, finally, pesticide-likeness (QEP). In the assessment of these definitions, we relied on the concept of desirability functions. Results: We found a simple function, shared by the three classes of pesticides, parameterized particularly, for six, easy to compute, independent and interpretable, molecular properties: molecular weight, logP, number of hydrogen bond acceptors, number of hydrogen bond donors, number of rotatable bounds and number of aromatic rings. Subsequently, we describe the scoring of each pesticide class by the corresponding quantitative estimate. In a comparative study, we assessed the performance of the scoring functions using extensive datasets of patented pesticides. Conclusions: The hereby-established quantitative assessment has the ability to rank compounds whether they fail well-established pesticide-likeness rules or not, and offer an efficient way to prioritize (class-specific) pesticides. These findings are valuable for the efficient estimation of pesticide-likeness of vast chemical libraries in the field of agrochemical discovery.
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页数:11
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