Myriads: P-value-based multiple testing correction

被引:33
作者
Carvajal-Rodriguez, Antonio [1 ]
机构
[1] Univ Vigo, Dept Biochem Genet & Immunol, Address Fac Biol, Vigo, Spain
关键词
TRUE NULL HYPOTHESES; FALSE DISCOVERY RATE; NUMBER;
D O I
10.1093/bioinformatics/btx746
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Motivation: There are many multiple testing correction methods. Some of them are robust to various dependencies in the data while others are not. Some of the implementations have problems for managing high dimensional list of P-values as currently demanded by microarray and other omic technologies. Results: The program Myriads, formerly SGoF+, provides some of the most important P-value-based correction methods jointly with a test of dependency and a P-value simulator. Myriads easily manage hundreds of thousands of P-values.
引用
收藏
页码:1043 / 1045
页数:3
相关论文
共 16 条
[1]  
Ali M. M., 1987, J BUS ECON STAT, V5, P203
[2]   CONTROLLING THE FALSE DISCOVERY RATE - A PRACTICAL AND POWERFUL APPROACH TO MULTIPLE TESTING [J].
BENJAMINI, Y ;
HOCHBERG, Y .
JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY, 1995, 57 (01) :289-300
[3]   A new multitest correction (SGoF) that increases its statistical power when increasing the number of tests [J].
Carvajal-Rodriguez, Antonio ;
de Una-Alvarez, Jacobo ;
Rolan-Alvarez, Emilio .
BMC BIOINFORMATICS, 2009, 10 :209
[4]   Adjusted p-values for SGoF multiple test procedure [J].
Castro-Conde, Irene ;
de Una-Alvarez, Jacobo .
BIOMETRICAL JOURNAL, 2015, 57 (01) :108-122
[5]   Correlation and large-scale simultaneous significance testing [J].
Efron, Bradley .
JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION, 2007, 102 (477) :93-103
[6]   Gene-expression profiles in hereditary breast cancer. [J].
Hedenfalk, I ;
Duggan, D ;
Chen, YD ;
Radmacher, M ;
Bittner, M ;
Simon, R ;
Meltzer, P ;
Gusterson, B ;
Esteller, M ;
Kallioniemi, OP ;
Wilfond, B ;
Borg, Å ;
Trent, J ;
Raffeld, M ;
Yakhini, Z ;
Ben-Dor, A ;
Dougherty, E ;
Kononen, J ;
Bubendorf, L ;
Fehrle, W ;
Pittaluga, S ;
Gruvberger, S ;
Loman, N ;
Johannsoson, O ;
Olsson, H ;
Sauter, G .
NEW ENGLAND JOURNAL OF MEDICINE, 2001, 344 (08) :539-548
[7]  
HOLM S, 1979, SCAND J STAT, V6, P65
[8]   Identification and characterization of conserved lncRNAs in human and rat brain [J].
Li, Dan ;
Yang, Mary Qu .
BMC BIOINFORMATICS, 2017, 18
[9]   Estimating the number of true null hypotheses from a histogram of p values [J].
Nettleton, Dan ;
Hwang, J. T. Gene ;
Caldo, Rico A. ;
Wise, Roger P. .
JOURNAL OF AGRICULTURAL BIOLOGICAL AND ENVIRONMENTAL STATISTICS, 2006, 11 (03) :337-356
[10]   Variance of the number of false discoveries [J].
Owen, AB .
JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY, 2005, 67 :411-426