Optimization of TRPV6 Calcium Channel Inhibitors Using a 3D Ligand-Based Virtual Screening Method

被引:45
作者
Simonin, Celine [1 ]
Awale, Mahendra [1 ]
Brand, Michael [1 ]
van Deursen, Ruud [1 ]
Schwartz, Julian [1 ]
Fine, Michael [2 ]
Kovacs, Gergely [2 ]
Haefliger, Pascal [2 ]
Gyimesi, Gergely [2 ]
Sithampari, Abilashan [2 ]
Charles, Roch-Philippe [2 ]
Hediger, Matthias A. [2 ]
Reymond, Jean-Louis [1 ]
机构
[1] Univ Bern, Dept Chem & Biochem, Natl Ctr Competence Res NCCR TransCure, CH-3012 Bern, Switzerland
[2] Univ Bern, Inst Biochem & Mol Med, Natl Ctr Competence Res NCCR TransCure, CH-3012 Bern, Switzerland
基金
瑞士国家科学基金会;
关键词
calcium channels; drug discovery; TRP channels; virtual screening; ZINC; BIOLOGY;
D O I
10.1002/anie.201507320
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Herein, we report the discovery of the first potent and selective inhibitor of TRPV6, a calcium channel overexpressed in breast and prostate cancer, and its use to test the effect of blocking TRPV6-mediated Ca2+-influx on cell growth. The inhibitor was discovered through a computational method, xLOS, a 3D-shape and pharmacophore similarity algorithm, a type of ligand-based virtual screening (LBVS) method described briefly here. Starting with a single weakly active seed molecule, two successive rounds of LBVS followed by optimization by chemical synthesis led to a selective molecule with 0.3 mm inhibition of TRPV6. The ability of xLOS to identify different scaffolds early in LBVS was essential to success. The xLOS method may be generally useful to develop tool compounds for poorly characterized targets.
引用
收藏
页码:14748 / 14752
页数:5
相关论文
共 50 条
  • [41] PKRank: a novel learning-to-rank method for ligand-based virtual screening using pairwise kernel and RankSVM
    Suzuki S.D.
    Ohue M.
    Akiyama Y.
    Artificial Life and Robotics, 2018, 23 (2) : 205 - 212
  • [42] Ligand-based pharmacophore filtering, atom based 3D-QSAR, virtual screening and ADME studies for the discovery of potential ck2 inhibitors
    Mohan, A.
    Kirubakaran, R.
    Parray, J. A.
    Sivakumar, R.
    Murugesh, E.
    Govarthanan, M.
    JOURNAL OF MOLECULAR STRUCTURE, 2020, 1205 (1205)
  • [43] Virtual Screening Data Fusion Using Both Structure- and Ligand-Based Methods
    Svensson, Fredrik
    Karlen, Anders
    Skold, Christian
    JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2012, 52 (01) : 225 - 232
  • [44] LBVS: an online platform for ligand-based virtual screening using publicly accessible databases
    Zheng, Minghao
    Liu, Zhihong
    Yan, Xin
    Ding, Qianzhi
    Gu, Qiong
    Xu, Jun
    MOLECULAR DIVERSITY, 2014, 18 (04) : 829 - 840
  • [45] CODES, a novel procedure for ligand-based virtual screening:: PDE7 inhibitors as an application example
    Castro, Ana
    Jose Jerez, Maria
    Gil, Carmen
    Calderson, Felix
    Domenech, Teresa
    Nueda, Arsenio
    Martinez, Ana
    EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY, 2008, 43 (07) : 1349 - 1359
  • [46] Identification of novel monoamine oxidase selective inhibitors employing a hierarchical ligand-based virtual screening strategy
    Wang, Dong
    Li, Zhaoyang
    Liu, Yi
    Chen, Mo
    Chen, Nianhang
    Zuo, Zhili
    Kong, De-Xin
    FUTURE MEDICINAL CHEMISTRY, 2019, 11 (08) : 801 - 816
  • [47] Ligand-based Pharmacophore Modeling and Virtual Screening to Discover Novel CYP1A1 Inhibitors
    Tahir, Rana Adnan
    Hassan, Farwa
    Kareem, Abdul
    Iftikhar, Umer
    Sehgal, Sheikh Arslan
    CURRENT TOPICS IN MEDICINAL CHEMISTRY, 2019, 19 (30) : 2782 - 2794
  • [48] Ligand-based virtual screening and biological evaluation of inhibitors of Mycobacterium tuberculosis H37Rv
    Pogodin, P. V.
    Salina, E. G.
    Semenov, V. V.
    Raihstat, M. M.
    Druzhilovskiy, D. S.
    Filimonov, D. A.
    Poroikov, V. V.
    SAR AND QSAR IN ENVIRONMENTAL RESEARCH, 2024, 35 (01) : 53 - 69
  • [49] Identification of a series of novel derivatives as potent HCV inhibitors by a ligand-based virtual screening optimized procedure
    Melagraki, Georgia
    Afantitis, Antreas
    Sarimveis, Haralambos
    Koutentis, Panayiotis A.
    Markopoulos, John
    Igglessi-Markopoulou, Olga
    BIOORGANIC & MEDICINAL CHEMISTRY, 2007, 15 (23) : 7237 - 7247
  • [50] LBVS: an online platform for ligand-based virtual screening using publicly accessible databases
    Minghao Zheng
    Zhihong Liu
    Xin Yan
    Qianzhi Ding
    Qiong Gu
    Jun Xu
    Molecular Diversity, 2014, 18 : 829 - 840