Estimating the age of the common ancestor of a sample of DNA sequences

被引:87
作者
Fu, YX
Li, WH
机构
[1] Human Genetics Center, University of Texas, Houston, TX
[2] Human Genetics Center, School of Public Health, University of Texas at Houston, Houston, TX 77225
关键词
common ancestor; age estimation; coalescent approach; Y chromosome; Alu sequence;
D O I
10.1093/oxfordjournals.molbev.a025753
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We present a simple Monte Carlo method for estimating the age of the most recent common ancestor (MRCA) of a sample of DNA sequences. We show that Templeton's (1993) estimator of the age of the MRCA based on the maximum number of nucleotide differences between two sequences in a sample is inaccurate, and we demonstrate the new method by reanalyzing a sample of DNA sequences from human Y chromosomes and a sample of human Alu sequences.
引用
收藏
页码:195 / 199
页数:5
相关论文
共 13 条
[1]  
Donnelly P, 1996, SCIENCE, V272, P1357, DOI 10.1126/science.272.5266.1357
[2]   ABSENCE OF POLYMORPHISM AT THE ZFY LOCUS ON THE HUMAN Y-CHROMOSOME [J].
DORIT, RL ;
AKASHI, H ;
GILBERT, W .
SCIENCE, 1995, 268 (5214) :1183-1185
[3]  
Fu YX, 1996, GENETICS, V144, P829
[4]  
Fu YX, 1996, SCIENCE, V272, P1356, DOI 10.1126/science.272.5266.1356
[5]   ANCESTRAL INFERENCE IN POPULATION-GENETICS [J].
GRIFFITHS, RC ;
TAVARE, S .
STATISTICAL SCIENCE, 1994, 9 (03) :307-319
[6]   A RECENT COMMON ANCESTRY FOR HUMAN-Y-CHROMOSOMES [J].
HAMMER, MF .
NATURE, 1995, 378 (6555) :376-378
[7]   DNA sequences of Alu elements indicate a recent replacement of the human autosomal genetic complement [J].
Knight, A ;
Batzer, MA ;
Stoneking, M ;
Tiwari, HK ;
Scheer, WD ;
Herrera, RJ ;
Deininger, PL .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1996, 93 (09) :4360-4364
[8]  
RUVOLO M, 1993, MOL BIOL EVOL, V10, P1115
[9]   A new approach to studying modern human origins: Hypothesis testing with coalescence time distributions [J].
Ruvolo, M .
MOLECULAR PHYLOGENETICS AND EVOLUTION, 1996, 5 (01) :202-219
[10]  
TAJIMA F, 1983, GENETICS, V105, P437