Real-time single-molecule observation of rolling-circle DNA replication

被引:61
|
作者
Tanner, Nathan A. [1 ]
Loparo, Joseph J. [1 ]
Hamdan, Samir M. [1 ]
Jergic, Slobodan [2 ]
Dixon, Nicholas E. [2 ]
van Oijen, Antoine M. [1 ]
机构
[1] Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA
[2] Univ Wollongong, Sch Chem, Wollongong, NSW 2522, Australia
基金
美国国家卫生研究院;
关键词
POLYMERASE-III HOLOENZYME; PROCESSIVE REPLICATION; PROTEIN; STRAND; DYNAMICS; FORK; DENSITY; TARGETS; PRIMASE;
D O I
10.1093/nar/gkp006
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We present a simple technique for visualizing replication of individual DNA molecules in real time. By attaching a rolling-circle substrate to a TIRF microscope-mounted flow chamber, we are able to monitor the progression of single-DNA synthesis events and accurately measure rates and processivities of single T7 and Escherichia coli replisomes as they replicate DNA. This method allows for rapid and precise characterization of the kinetics of DNA synthesis and the effects of replication inhibitors.
引用
收藏
页数:6
相关论文
共 50 条
  • [21] Single-Molecule Real-Time Transcript Sequencing of Turnips Unveiling the Complexity of the Turnip Transcriptome
    Zhuang, Hongmei
    Wang, Qiang
    Han, Hongwei
    Liu, Huifang
    Wang, Hao
    G3-GENES GENOMES GENETICS, 2020, 10 (10): : 3505 - 3514
  • [22] Building a reference transcriptome for Juniperus squamata (Cupressaceae) based on single-molecule real-time sequencing
    Wang, Yufei
    Xie, Siyu
    Li, Jialiang
    Tang, Jieshi
    Ju, Tsam
    Mao, Kangshan
    BMC GENOMIC DATA, 2021, 22 (01):
  • [23] Achieving Single-Molecule Tracking of Subcellular Regulation in Bacteria during Real-Time Environmental Perturbations
    Calkins, Anna L.
    Demey, Lucas M.
    Rosenthal, Brooke M.
    DiRita, Victor J.
    Biteen, Julie S.
    ANALYTICAL CHEMISTRY, 2023, 95 (02) : 774 - 783
  • [24] Single-Molecule DNA Analysis
    Efcavitch, J. William
    Thompson, John F.
    ANNUAL REVIEW OF ANALYTICAL CHEMISTRY, VOL 3, 2010, 3 : 109 - 128
  • [25] Single-molecule studies contrast ordered DNA replication with stochastic translesion synthesis
    Zhao, Gengjing
    Gleave, Emma S.
    Lamers, Meindert Hugo
    ELIFE, 2017, 6
  • [26] Rolling-circle amplification of viral DNA genomes using phi29 polymerase
    Johne, Reimar
    Mueller, Hermann
    Rector, Annabel
    van Ranst, Marc
    Stevens, Hans
    TRENDS IN MICROBIOLOGY, 2009, 17 (05) : 205 - 211
  • [27] Single-molecule imaging reveals control of parental histone recycling by free histones during DNA replication
    Gruszka, D. T.
    Xie, S.
    Kimura, H.
    Yardimci, H.
    SCIENCE ADVANCES, 2020, 6 (38):
  • [28] High-throughput platform for real-time monitoring of biological processes by multicolor single-molecule fluorescence
    Chen, Jin
    Dalal, Ravindra V.
    Petrov, Alexey N.
    Tsai, Albert
    O'Leary, Sean E.
    Chapin, Karen
    Cheng, Janice
    Ewan, Mark
    Hsiung, Pei-Lin
    Lundquist, Paul
    Turner, Stephen W.
    Hsu, David R.
    Puglisi, Joseph D.
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2014, 111 (02) : 664 - 669
  • [29] Nuclear accessibility of β-actin mRNA is measured by 3D single-molecule real-time tracking
    Smith, Carlas S.
    Preibisch, Stephan
    Joseph, Aviva
    Abrahamsson, Sara
    Rieger, Bernd
    Myers, Eugene
    Singer, Robert H.
    Grunwald, David
    JOURNAL OF CELL BIOLOGY, 2015, 209 (04) : 609 - 619
  • [30] Single-Molecule Observation of Ligand Binding and Conformational Changes in FeuA
    de Boer, Marijn
    Gouridis, Giorgos
    Muthahari, Yusran Abdillah
    Cordes, Thorben
    BIOPHYSICAL JOURNAL, 2019, 117 (09) : 1642 - 1654