Whole-Genome Sequences of Eight Clinical Isolates of Burkholderia pseudomallei from Melioidosis Patients in Eastern Sri Lanka

被引:5
作者
Jayasinghearachchi, Himali S. [1 ]
Corea, Enoka M. [2 ]
Krishnananthasivam, Shivankari [3 ,5 ]
Sathkumara, Harindra D. [3 ,6 ]
Francis, Vaithehi R. [4 ]
Abeysekere, Thimirangi R. [3 ,7 ]
De Silva, Aruna Dharshan [1 ]
机构
[1] Gen Sir John Kotelawala Def Univ, Fac Med, Dept Paraclin Sci, Biomed Lab 02, Ratmalana, Sri Lanka
[2] Univ Colombo, Fac Med, Dept Microbiol, Colombo, Sri Lanka
[3] Genetech Res Inst, Colombo, Sri Lanka
[4] Eastern Univ, Fac Hlth Care Sci, Dept Microbiol, Vantharumoolai, Sri Lanka
[5] Natl Univ Singapore, Yong Loo Lin Sch Med, Dept Microbiol & Immunol, Ctr Life Sci, Singapore, Singapore
[6] James Cook Univ, Australian Inst Trop Hlth & Med, Townsville, Qld, Australia
[7] Family Rehabil Ctr, Colombo, Sri Lanka
来源
MICROBIOLOGY RESOURCE ANNOUNCEMENTS | 2019年 / 8卷 / 33期
关键词
ALGORITHM;
D O I
10.1128/MRA.00645-19
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Here, we report whole-genome sequences (WGS) of eight clinical isolates of Burkholderia pseudomallei obtained from melioidosis patients with sepsis in eastern Sri Lanka.
引用
收藏
页数:3
相关论文
共 15 条
[1]  
Andrews S., 2014, Babraham Bioinformatics, DOI DOI 10.1093/BIOINFORMATICS/BTW354
[2]   ABACAS: algorithm-based automatic contiguation of assembled sequences [J].
Assefa, Samuel ;
Keane, Thomas M. ;
Otto, Thomas D. ;
Newbold, Chris ;
Berriman, Matthew .
BIOINFORMATICS, 2009, 25 (15) :1968-1969
[3]   The RAST server: Rapid annotations using subsystems technology [J].
Aziz, Ramy K. ;
Bartels, Daniela ;
Best, Aaron A. ;
DeJongh, Matthew ;
Disz, Terrence ;
Edwards, Robert A. ;
Formsma, Kevin ;
Gerdes, Svetlana ;
Glass, Elizabeth M. ;
Kubal, Michael ;
Meyer, Folker ;
Olsen, Gary J. ;
Olson, Robert ;
Osterman, Andrei L. ;
Overbeek, Ross A. ;
McNeil, Leslie K. ;
Paarmann, Daniel ;
Paczian, Tobias ;
Parrello, Bruce ;
Pusch, Gordon D. ;
Reich, Claudia ;
Stevens, Rick ;
Vassieva, Olga ;
Vonstein, Veronika ;
Wilke, Andreas ;
Zagnitko, Olga .
BMC GENOMICS, 2008, 9 (1)
[4]   SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing [J].
Bankevich, Anton ;
Nurk, Sergey ;
Antipov, Dmitry ;
Gurevich, Alexey A. ;
Dvorkin, Mikhail ;
Kulikov, Alexander S. ;
Lesin, Valery M. ;
Nikolenko, Sergey I. ;
Son Pham ;
Prjibelski, Andrey D. ;
Pyshkin, Alexey V. ;
Sirotkin, Alexander V. ;
Vyahhi, Nikolay ;
Tesler, Glenn ;
Alekseyev, Max A. ;
Pevzner, Pavel A. .
JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) :455-477
[5]   Trimmomatic: a flexible trimmer for Illumina sequence data [J].
Bolger, Anthony M. ;
Lohse, Marc ;
Usadel, Bjoern .
BIOINFORMATICS, 2014, 30 (15) :2114-2120
[6]   Melioidosis in Sri Lanka [J].
Corea, Enoka M. ;
de Silva, Aruna Dharshan ;
Thevanesam, Vasanthi .
TROPICAL MEDICINE AND INFECTIOUS DISEASE, 2018, 3 (01)
[7]   MultiQC: summarize analysis results for multiple tools and samples in a single report [J].
Ewels, Philip ;
Magnusson, Mans ;
Lundin, Sverker ;
Kaller, Max .
BIOINFORMATICS, 2016, 32 (19) :3047-3048
[8]   Whole-Genome Sequences of 80 Environmental and Clinical Isolates of Burkholderia pseudomallei [J].
Johnson, Shannon L. ;
Baker, Anthony L. ;
Chain, Patrick S. ;
Currie, Bart J. ;
Daligault, Hajnalka E. ;
Davenport, Karen W. ;
Davis, Christopher B. ;
Inglis, Timothy J. J. ;
Kaestli, Mirjam ;
Koren, Sergey ;
Mayo, Mark ;
Merritt, Adam J. ;
Price, Erin P. ;
Sarovich, Derek S. ;
Warner, Jeffrey ;
Rosovitz, M. J. .
GENOME ANNOUNCEMENTS, 2015, 3 (01)
[9]   Fast and accurate short read alignment with Burrows-Wheeler transform [J].
Li, Heng ;
Durbin, Richard .
BIOINFORMATICS, 2009, 25 (14) :1754-1760
[10]  
Merritt Adam, 2006, Rev. Inst. Med. trop. S. Paulo, V48, P239, DOI 10.1590/S0036-46652006000500001