Displacements, Mean-Squared Displacements, and Codisplacennents for the Calculation of Nonequilibrium Properties

被引:24
|
作者
Agnihotri, Mithila V. [1 ]
Chen, Si-Han [2 ]
Beck, Corey [2 ]
Singer, Sherwin J. [1 ,2 ]
机构
[1] Ohio State Univ, Biophys Program, Columbus, OH 43210 USA
[2] Ohio State Univ, Dept Chem & Biochem, Columbus, OH 43210 USA
来源
JOURNAL OF PHYSICAL CHEMISTRY B | 2014年 / 118卷 / 28期
基金
美国国家科学基金会;
关键词
FREQUENCY-DEPENDENT CONDUCTIVITY; MOLECULAR-DYNAMICS SIMULATIONS; CHARGED POROUS-MEDIA; ELECTROLYTE-SOLUTIONS; AQUEOUS-SOLUTIONS; DIELECTRIC-RELAXATION; POISEUILLE FLOW; WATER; TRANSPORT; ELCTROOSMOSIS;
D O I
10.1021/jp5012523
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We study two situations in which nonequilibrium phenomena can be efficiently calculated using displacements, mean-squared displacements, or codisplacements instead of accumulating velocities or currents. The flow velocity profile for a fluid confined within a pore can be expressed as a sum of displacements within slabs from a molecular dynamics trajectory. In this form, an accurate flow profile is obtained from very sparse sampling of the trajectory. We also recast the linear response theory expression for the flow velocity profile in terms of mean codisplacements and demonstrate that this provides an efficient route for estimating the Green-Kubo expression for the velocity profile. Finally, we calculate the ionic contribution to the frequency-dependent electric susceptibility using dipolar displacements, instead of the conventional current-current correlation function. We expect these methods to be useful for generating transport properties from stored trajectories in very large systems or systems where relaxation times are long.
引用
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页码:8170 / 8178
页数:9
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