Recent advances in quantitative structure-activity relationship models of antimalarial drugs

被引:14
作者
Ojha, Probir Kumar [1 ]
Kumar, Vinay [1 ]
Roy, Joyita [1 ]
Roy, Kunal [1 ]
机构
[1] Jadavpur Univ, Dept Pharmaceut Technol, Drug Theoret & Cheminformat Lab, Kolkata, India
关键词
Malaria; qsar; resistance; validation; double Cross-Validation; virtual screening; MOLECULAR DOCKING; QSAR; REQUIREMENTS; DERIVATIVES; INHIBITION; REGRESSION; 2D-QSAR; 3D-QSAR; TOOL;
D O I
10.1080/17460441.2021.1866535
中图分类号
R9 [药学];
学科分类号
1007 ;
摘要
Introduction: Due to emerging resistance to the first-line artemisinin-based antimalarials and lack of efficient vaccines and limited chemotherapeutic alternatives, there is an urgent need to develop new antimalarial compounds. In this regard, quantitative structure-activity relationship (QSAR) modeling can provide essential information about required physicochemical properties and structural parameters of antimalarial drug candidates. Areas covered: The authors provide an overview of recent advances of QSAR models covering different classes of antimalarial compounds as well as molecular docking studies of compounds acting on different antimalarial targets reported in the last 5 years (2015-2019) to explore the mode of interactions between the molecules and the receptors. We have tried to cover most of the QSAR models of antimalarials (along with results from some other related computational methods) reported during 2015-2019. Expert opinion: Many QSAR reports for antimalarial compounds are based on small number of data points. This review infers that most of the present work deals with analog-based QSAR approach with a limited applicability domain (a very few cases with wide domain) whereas novel target-based computational approach is reported in very few cases, which leads to huge voids of computational work based on novel antimalarial targets.
引用
收藏
页码:659 / 695
页数:37
相关论文
共 116 条
  • [1] Abbasitabar F, 2017, DRUG RES, V67, P476, DOI 10.1055/s-0043-108553
  • [2] Abraham DJ, 1997, PRACTICAL APPL COMPU
  • [3] First report on exploring classification and regression based QSAR modelling of Plasmodium falciparum glycogen synthase kinase (PfGSK-3) inhibitors
    Aher, R. Balasaheb
    Roy, K.
    [J]. SAR AND QSAR IN ENVIRONMENTAL RESEARCH, 2015, 26 (11) : 959 - 976
  • [4] Exploring structural requirements for the inhibition of Plasmodium falciparum calcium-dependent protein kinase-4 (PfCDPK-4) using multiple in silico approaches
    Aher, Rahul Balasaheb
    Roy, Kunal
    [J]. RSC ADVANCES, 2016, 6 (57) : 51957 - 51982
  • [5] Understanding the Structural Requirements in Diverse Scaffolds for the Inhibition of P-falciparum Dihydroorotate Dehydrogenase (PfDHODH) Using 2D-QSAR, 3D-Pharmacophore and Structure-Based Energy-Optimized Pharmacophore Models
    Aher, Rahul Balasaheb
    Roy, Kunal
    [J]. COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING, 2015, 18 (02) : 217 - 226
  • [6] Three-dimensional QSAR using the k-nearest neighbor method and its interpretation
    Ajmani, S
    Jadhav, K
    Kulkarni, SA
    [J]. JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2006, 46 (01) : 24 - 31
  • [7] Group-Based QSAR (G-QSAR): Mitigating Interpretation Challenges in QSAR
    Ajmani, Subhash
    Jadhav, Kamalakar
    Kulkarni, Sudhir A.
    [J]. QSAR & COMBINATORIAL SCIENCE, 2009, 28 (01): : 36 - 51
  • [8] Alam Athar, 2009, Expert Rev Clin Pharmacol, V2, P469, DOI 10.1586/ecp.09.28
  • [9] New Workflow for QSAR Model Development from Small Data Sets: Small Dataset Curator and Small Dataset Modeler. Integration of Data Curation, Exhaustive Double Cross-Validation, and a Set of Optimal Model Selection Techniques
    Ambure, Pravin
    Gajewicz-Skretna, Agnieszka
    Cordeiro, M. Natalia D. S.
    Roy, Kunal
    [J]. JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2019, 59 (10) : 4070 - 4076
  • [10] The safety of atovaquone-proguanil for the prevention and treatment of malaria in pregnancy: A systematic review
    Andrejko, Kristin L.
    Mayer, Romana C.
    Kovacs, Stephanie
    Slutsker, Emma
    Bartlett, Emily
    Tan, Kathrine R.
    Gutman, Julie R.
    [J]. TRAVEL MEDICINE AND INFECTIOUS DISEASE, 2019, 27 : 20 - 26