Reorientational Dynamics of Amyloid-β from NMR Spin Relaxation and Molecular Simulation

被引:23
作者
Rezaei-Ghaleh, Nasrollah [1 ,2 ]
Parigi, Giacomo [3 ,4 ]
Zweckstetter, Markus [1 ,2 ,5 ]
机构
[1] Univ Med Ctr Goettingen, Dept Neurol, D-37075 Gottingen, Germany
[2] Max Planck Inst Biophys Chem, Dept NMR Based Struct Biol, D-37077 Gottingen, Germany
[3] Univ Florence, Magnet Resonance Ctr CERM, Via Sacconi 6, I-50019 Sesto Fiorentino, Italy
[4] Univ Florence, Dept Chem Ugo Schiff, Via Sacconi 6, I-50019 Sesto Fiorentino, Italy
[5] German Ctr Neurodegenerat Dis DZNE, Res Grp Struct Biol Dementia, D-37075 Gottingen, Germany
基金
欧洲研究理事会;
关键词
INTRINSICALLY DISORDERED PROTEINS; CORRELATED DYNAMICS; AGGREGATION; PEPTIDE; FIELD; CONFORMATION; SPECTROSCOPY; A-BETA-42; KINETICS; FIBRILS;
D O I
10.1021/acs.jpclett.9b01050
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Amyloid-beta (A beta) aggregation is a hallmark of Alzheimers disease. As an intrinsically disordered protein, A ss undergoes extensive dynamics on multiple length and time scales. Access to a comprehensive picture of the reorientational dynamics in A beta requires therefore the combination of complementary techniques. Here, we integrate N-15 spin relaxation rates at three magnetic fields with microseconds-long molecular dynamics simulation, ensemble-based hydrodynamic calculations, and previously published nanosecond fluorescence correlation spectroscopy to investigate the reorientational dynamics of A beta 1-40 (A beta 40) at single-residue resolution. The integrative analysis shows that librational and dihedral angle fluctuations occurring at fast and intermediate time scales are not sufficient to decorrelate orientational memory in A beta 40. Instead, slow segmental motions occurring at similar to 5 ns are detected throughout the A beta 40 sequence and reach up to similar to 10 ns for selected residues. We propose that the modulation of time scales of reorientational dynamics with respect to intra- and intermolecular diffusion plays an important role in disease-related A beta aggregation.
引用
收藏
页码:3369 / 3375
页数:13
相关论文
共 53 条
[21]  
LIPARI G, 1981, BIOPHYS J, V33, pA30
[22]   Molecular Structure of β-Amyloid Fibrils in Alzheimer's Disease Brain Tissue [J].
Lu, Jun-Xia ;
Qiang, Wei ;
Yau, Wai-Ming ;
Schwieters, Charles D. ;
Meredith, Stephen C. ;
Tycko, Robert .
CELL, 2013, 154 (06) :1257-1268
[23]   Collective relaxation of protein protons at very low magnetic field: A new window on protein dynamics and aggregation [J].
Luchinat, Claudio ;
Parigi, Giacomo .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2007, 129 (05) :1055-1064
[24]   Biochemistry of Amyloid β-Protein and Amyloid Deposits in Alzheimer Disease [J].
Masters, Colin L. ;
Selkoe, Dennis J. .
COLD SPRING HARBOR PERSPECTIVES IN MEDICINE, 2012, 2 (06)
[25]   Differences in nucleation behavior underlie the contrasting aggregation kinetics of the Aβ40 and Aβ42 peptides [J].
Meisl, Georg ;
Yang, Xiaoting ;
Hellstrand, Erik ;
Frohm, Birgitta ;
Kirkegaard, Julius B. ;
Cohen, Samuel I. A. ;
Dobson, Christopher M. ;
Linse, Sara ;
Knowles, Tuomas P. J. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2014, 111 (26) :9384-9389
[26]   Highly Disordered Amyloid-β Monomer Probed by Single-Molecule FRET and MD Simulation [J].
Meng, Fanjie ;
Bellaiche, Mathias M. J. ;
Kim, Jae-Yeol ;
Zerze, Gul H. ;
Best, Robert B. ;
Chung, Hoi Sung .
BIOPHYSICAL JOURNAL, 2018, 114 (04) :870-884
[27]   Characterization of intrinsically disordered proteins and their dynamic complexes: From in vitro to cell-like environments [J].
Milles, Sigrid ;
Salvi, Nicola ;
Blackledge, Martin ;
Jensen, Malene Ringkjobing .
PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY, 2018, 109 :79-100
[28]   A practical guide to protein dynamics from 15N spin relaxation in solution [J].
Morin, Sebastien .
PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY, 2011, 59 (03) :245-262
[29]   Alzheimer's disease-associated ubiquitin mutant Ubb+1: Properties of the carboxy-terminal domain and its influence on biomolecular interactions [J].
Munari, Francesca ;
Bortot, Andrea ;
Assfalg, Michael ;
D'Onofrio, Mariapina .
INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 2018, 108 :24-31
[30]   Structural Plasticity in Human Heterochromatin Protein 1β [J].
Munari, Francesca ;
Rezaei-Ghaleh, Nasrollah ;
Xiang, Shengqi ;
Fischle, Wolfgang ;
Zweckstetter, Markus .
PLOS ONE, 2013, 8 (04)