Reorientational Dynamics of Amyloid-β from NMR Spin Relaxation and Molecular Simulation

被引:23
作者
Rezaei-Ghaleh, Nasrollah [1 ,2 ]
Parigi, Giacomo [3 ,4 ]
Zweckstetter, Markus [1 ,2 ,5 ]
机构
[1] Univ Med Ctr Goettingen, Dept Neurol, D-37075 Gottingen, Germany
[2] Max Planck Inst Biophys Chem, Dept NMR Based Struct Biol, D-37077 Gottingen, Germany
[3] Univ Florence, Magnet Resonance Ctr CERM, Via Sacconi 6, I-50019 Sesto Fiorentino, Italy
[4] Univ Florence, Dept Chem Ugo Schiff, Via Sacconi 6, I-50019 Sesto Fiorentino, Italy
[5] German Ctr Neurodegenerat Dis DZNE, Res Grp Struct Biol Dementia, D-37075 Gottingen, Germany
基金
欧洲研究理事会;
关键词
INTRINSICALLY DISORDERED PROTEINS; CORRELATED DYNAMICS; AGGREGATION; PEPTIDE; FIELD; CONFORMATION; SPECTROSCOPY; A-BETA-42; KINETICS; FIBRILS;
D O I
10.1021/acs.jpclett.9b01050
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Amyloid-beta (A beta) aggregation is a hallmark of Alzheimers disease. As an intrinsically disordered protein, A ss undergoes extensive dynamics on multiple length and time scales. Access to a comprehensive picture of the reorientational dynamics in A beta requires therefore the combination of complementary techniques. Here, we integrate N-15 spin relaxation rates at three magnetic fields with microseconds-long molecular dynamics simulation, ensemble-based hydrodynamic calculations, and previously published nanosecond fluorescence correlation spectroscopy to investigate the reorientational dynamics of A beta 1-40 (A beta 40) at single-residue resolution. The integrative analysis shows that librational and dihedral angle fluctuations occurring at fast and intermediate time scales are not sufficient to decorrelate orientational memory in A beta 40. Instead, slow segmental motions occurring at similar to 5 ns are detected throughout the A beta 40 sequence and reach up to similar to 10 ns for selected residues. We propose that the modulation of time scales of reorientational dynamics with respect to intra- and intermolecular diffusion plays an important role in disease-related A beta aggregation.
引用
收藏
页码:3369 / 3375
页数:13
相关论文
共 53 条
[1]   The hairpin conformation of the amyloid β peptide is an important structural motif along the aggregation pathway [J].
Abelein, Axel ;
Abrahams, Jan Pieter ;
Danielsson, Jens ;
Graslund, Astrid ;
Jarvet, Juri ;
Luo, Jinghui ;
Tiiman, Ann ;
Warmlander, Sebastian K. T. S. .
JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY, 2014, 19 (4-5) :623-634
[2]   Identification of Dynamic Modes in an Intrinsically Disordered Protein Using Temperature-Dependent NMR Relaxation [J].
Abyzov, Anton ;
Salvi, Nicola ;
Schneider, Robert ;
Maurin, Damien ;
Ruigrok, Rob W. H. ;
Jensen, Malene Ringkjobing ;
Blackledge, Martin .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2016, 138 (19) :6240-6251
[3]   Aggregation of α-synuclein is kinetically controlled by intramolecular diffusion [J].
Ahmad, Basir ;
Chen, Yujie ;
Lapidus, Lisa J. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2012, 109 (07) :2336-2341
[4]   Aggregation kinetics of the Aβ1-40 peptide monitored by NMR [J].
Bellomo, Giovanni ;
Bologna, Sara ;
Gonnelli, Leonardo ;
Ravera, Enrico ;
Fragai, Marco ;
Lelli, Moreno ;
Luchinat, Claudio .
CHEMICAL COMMUNICATIONS, 2018, 54 (55) :7601-7604
[5]   Balanced Protein-Water Interactions Improve Properties of Disordered Proteins and Non-Specific Protein Association [J].
Best, Robert B. ;
Zheng, Wenwei ;
Mittal, Jeetain .
JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2014, 10 (11) :5113-5124
[6]   Solid-Phase Synthesis and Characterization of N-Terminally Elongated Aβ-3-x-Peptides [J].
Beyer, Isaak ;
Rezaei-Ghaleh, Nasrollah ;
Klafki, Hans-Wolfgang ;
Jahn, Olaf ;
Haussmann, Ute ;
Wiltfang, Jens ;
Zweckstetter, Markus ;
Knoelker, Hans-Joachim .
CHEMISTRY-A EUROPEAN JOURNAL, 2016, 22 (25) :8685-8693
[7]   15N relaxation study of the amyloid β-peptide:: structural propensities and persistence length [J].
Danielsson, Jens ;
Andersson, August ;
Jarvet, Juri ;
Graslund, Astrid .
MAGNETIC RESONANCE IN CHEMISTRY, 2006, 44 :S114-S121
[8]   Order, Disorder, and Everything in Between [J].
DeForte, Shelly ;
Uversky, Vladimir N. .
MOLECULES, 2016, 21 (08)
[9]   Structural Polymorphism of Alzheimer's β-Amyloid Fibrils as Controlled by an E22 Switch: A Solid-State NMR Study [J].
Elkins, Matthew R. ;
Wang, Tuo ;
Nick, Mimi ;
Jo, Hyunil ;
Lemmin, Thomas ;
Prusiner, Stanley B. ;
DeGrado, William F. ;
Stohr, Jan ;
Hong, Mei .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2016, 138 (31) :9840-9852
[10]   COMPARISON OF THE BACKBONE DYNAMICS OF A FOLDED AND AN UNFOLDED SH3 DOMAIN EXISTING IN EQUILIBRIUM IN AQUEOUS BUFFER [J].
FARROW, NA ;
ZHANG, OW ;
FORMANKAY, JD ;
KAY, LE .
BIOCHEMISTRY, 1995, 34 (03) :868-878