Genome Wide Analysis of Amino Acid Transporter Superfamily in Solanum lycopersicum

被引：11
作者：
Omari Alzahrani, Fatima [1 ]
机构：
[1] Albaha Univ, Fac Sci, Dept Biol, Albaha 65527, Albaha Province, Saudi Arabia
来源：
PLANTS-BASEL | 2021年 / 10卷 / 02期
关键词：
tomato; phylogenetic analysis; expression; evolution; HIGH-AFFINITY TRANSPORTER; COMPATIBLE SOLUTE TRANSPORTERS; SUBSTRATE-SPECIFICITY; DIFFERENTIAL EXPRESSION; DEVELOPING SEEDS; AUXIN; FAMILY; PROLINE; PERMEASES; CELLS;
D O I：
10.3390/plants10020289
中图分类号：
Q94 [植物学];
学科分类号：
071001 ;
摘要：
Amino acid transporters (AATs) are integral membrane proteins and have several functions, including transporting amino acids across cellular membranes. They are critical for plant growth and development. This study comprehensively identified AAT-encoding genes in tomato (Solanum lycopersicum), which is an important vegetable crop and serves as a model for fleshy fruit development. In this study, 88 genes were identified in the S. lycopersicum genome and grouped into 12 subfamilies, based on previously identified AATs in Arabidopsis, rice (Oryza sativa), and potato (Solanum tuberosum) plants. Chromosomal localization revealed that S. lycopersicum AAT (SIAAT) genes are distributed on the 12 S. lycopersicum chromosomes. Segmental duplication events contribute mainly to the expansion of SIAAT genes and about 32% (29 genes) of SIAAT genes were found to originate from this type of event. Expression profiles of SIAAT genes in various tissues of S. lycopersicum using RNA sequencing data from the Tomato Functional Genomics Database showed that SIAAT genes exhibited tissue-specific expression patterns. Comprehensive data generated in this study will provide a platform for further studies on the SIAAT gene family and will facilitate the functional characterization of SIAAT genes.
引用
收藏
页码：1 / 20
页数：20
相关论文
共 50 条
[31]   Genome-wide identification and expression analysis of the UPF0016 family in tomato (Solanum lycopersicum) under drought stress [J].
Cui, Xiaoyu ;
Gu, Jiamao ;
Liu, Pengkun ;
Fu, Hongdan ;
Wang, Feng ;
Qi, Mingfang ;
Sun, Zhouping ;
Liu, Yufeng ;
Li, Tianlai .
ENVIRONMENTAL AND EXPERIMENTAL BOTANY, 2024, 219
[32]   Genome-wide Comparative Analysis of Annexin Superfamily in Plants [J].
Jami, Sravan Kumar ;
Clark, Greg B. ;
Ayele, Belay T. ;
Ashe, Paula ;
Kirti, Pulugurtha Bharadwaja .
PLOS ONE, 2012, 7 (11)
[33]   Genome-wide characterization of the NLR gene family in tomato (Solanum lycopersicum) and their relatedness to disease resistance [J].
Bashir, Sehrish ;
Rehman, Nazia ;
Zaman, Fabia Fakhar ;
Naeem, Muhammad Kashif ;
Jamal, Atif ;
Tellier, Aurelien ;
Ilyas, Muhammad ;
Arias, Gustavo Adolfo Silva ;
Khan, Muhammad Ramzan .
FRONTIERS IN GENETICS, 2022, 13
[34]   Genome-wide survey of the amino acid transporter gene family in wheat (Triticum aestivum L.): Identification, expression analysis and response to abiotic stress [J].
Tian, Ruizheng ;
Yang, Yang ;
Chen, Maohua .
INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 2020, 162 :1372-1387
[35]   Genome-Wide Analysis of Lectin Receptor-Like Kinases in Tomato (Solanum lycopersicum) and Its Association with the Infection of Tomato Yellow Leaf Curl Virus [J].
Zhao, Tongmin ;
Wang, Jinyan ;
Zhang, Baolong ;
Hou, Xilin .
PLANT MOLECULAR BIOLOGY REPORTER, 2018, 36 (03) :429-438
[36]   Genome-Wide Identification, Classification and Expression Analysis of m6A Gene Family in Solanum lycopersicum [J].
Shen, Hui ;
Luo, Baobing ;
Wang, Yunshu ;
Li, Jing ;
Hu, Zongli ;
Xie, Qiaoli ;
Wu, Ting ;
Chen, Guoping .
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2022, 23 (09)
[37]   Genome-wide identification and expression analysis of serine hydroxymethyltransferase (SHMT) gene family in tomato (Solanum lycopersicum) [J].
Liu, Zesheng ;
Pan, Xuejuan ;
Wang, Chunlei ;
Yun, Fahong ;
Huang, Dengjing ;
Yao, Yandong ;
Gao, Rong ;
Ye, Fujin ;
Liu, Xingjuan ;
Liao, Weibiao .
PEERJ, 2022, 10
[38]   Genome-wide identification and expression analysis of serine hydroxymethyltransferase (SHMT) gene family in tomato (Solanum lycopersicum) [J].
Liu, Zesheng ;
Pan, Xuejuan ;
Wang, Chunlei ;
Yun, Fahong ;
Huang, Dengjing ;
Yao, Yandong ;
Gao, Rong ;
Ye, Fujin ;
Liu, Xingjuan ;
Liao, Weibiao .
PEERJ COMPUTER SCIENCE, 2022, 10
[39]   Genome-wide analysis of HECT E3 ubiquitin ligase gene family in Solanum lycopersicum [J].
Sharma, Bhaskar ;
Saxena, Harshita ;
Negi, Harshita .
SCIENTIFIC REPORTS, 2021, 11 (01)
[40]   Genome-wide identification and expression analysis of serine hydroxymethyltransferase (SHMT) gene family in tomato (Solanum lycopersicum) [J].
Liu, Zesheng ;
Pan, Xuejuan ;
Wang, Chunlei ;
Yun, Fahong ;
Huang, Dengjing ;
Yao, Yandong ;
Gao, Rong ;
Ye, Fujin ;
Liu, Xingjuan ;
Liao, Weibiao .
PEERJ COMPUTER SCIENCE, 2022, 8
12345