The evolutionary and phylogeographic history of woolly mammoths: a comprehensive mitogenomic analysis

被引：50

作者：

Chang, Dan ^{[1
]}

Knapp, Michael ^{[2
]}

Enk, Jacob ^{[3
]}

Lippold, Sebastian ^{[4
]}

Kircher, Martin ^{[5
]}

Lister, Adrian ^{[6
]}

MacPhee, Ross D. E. ^{[7
]}

Widga, Christopher ^{[8
]}

Czechowski, Paul ^{[9
]}

Sommer, Robert ^{[10
]}

Hodges, Emily ^{[11
]}

Stuempel, Nikolaus ^{[12
]}

Barnes, Ian ^{[6
]}

Dalen, Love ^{[13
]}

Derevianko, Anatoly ^{[14
]}

Germonpre, Mietje ^{[15
]}

Hillebrand-Voiculescu, Alexandra ^{[16
]}

Constantin, Silviu ^{[16
]}

Kuznetsova, Tatyana ^{[17
]}

Mol, Dick ^{[18
]}

Rathgeber, Thomas ^{[19
]}

Rosendahl, Wilfried ^{[20
]}

Tikhonov, Alexey N. ^{[21
,22
]}

Willerslev, Eske ^{[23
,24
,25
]}

Hannon, Greg ^{[26
]}

Lalueza-Fox, Carles ^{[27
]}

Joger, Ulrich ^{[12
]}

Poinar, Hendrik ^{[3
]}

Hofreiter, Michael ^{[28
]}

Shapiro, Beth ^{[1
]}

机构：

[1] Univ Calif Santa Cruz, Dept Ecol & Evolutionary Biol, Santa Cruz, CA 95064 USA

[2] Univ Otago, Dept Anat, 270 Great King St, Dunedin 9016, New Zealand

[3] McMaster Univ, Dept Anthropol, McMaster Ancient DNA Ctr, 1280 Main St West, Hamilton, ON L8S 4L9, Canada

[4] Max Planck Inst Evolutionary Anthropol, Dept Evolutionary Genet, Deutsch Pl 6, D-04103 Leipzig, Germany

[5] Univ Washington, Dept Genome Sci, 3720 15th Ave NE, Seattle, WA 98195 USA

[6] Nat Hist Museum, Dept Earth Sci, Cromwell Rd, London SW7 5BD, England

[7] Amer Museum Nat Hist, Dept Mammal, 200 Cent Pk West, New York, NY 10024 USA

[8] East Tennessee State Univ, Ctr Excellence Paleontol, 1212 Sunset Dr, Gray, TN 37615 USA

[9] Antarctic Biol Res Initiat, 31 Jobson Rd, Bolivar, SA 5110, Australia

[10] Univ Rostock, Inst Biosci, Dept Zool, Univ Pl 2, D-18055 Rostock, Germany

[11] Vanderbilt Univ, Sch Med, Dept Biochem, 2215 Garland Ave, Nashville, TN 37232 USA

[12] Staatliches Nat Hist Museum Braunschweig, Pockelstr 10, D-38106 Braunschweig, Germany

[13] Swedish Museum Nat Hist, Dept Bioinformat & Genet, POB 50007, S-10405 Stockholm, Sweden

[14] Russian Acad Sci, Siberian Branch, Inst Archaeol & Ethnog, 17 Akad Lavrentieva, Novosibirsk 630090, Russia

[15] Royal Belgian Inst Nat Sci, Operat Directorate Earth & Hist Life, Vautierstr 29, B-1000 Brussels, Belgium

[16] Emil Racovita Inst Speleol, Frumoasa 31, Bucharest 01906, Romania

[17] Moscow MV Lomonosov State Univ, Fac Geol, Dept Palaeontol, Ul Leninskiye Gory 1, Moscow 119991, Russia

[18] Mammuthus Club Int, Gudumholm 41, NL-2133 HG Hoofddorp, Netherlands

[19] Staatliches Museum Nat Kunde Stuttgart Rosenstein, Gewann 1, D-70191 Stuttgart, Germany

[20] Reiss Engelhorn Museen, Dept World Cultures & Environm, C 5 Zeughaus, D-68159 Mannheim, Germany

[21] Russian Acad Sci, Inst Zool, Univ Skaya Nab 1, St Petersburg 199034, Russia

[22] North Eastern Fed Univ, Inst Appl Ecol, Lenina 1, Yakutsk, Russia

[23] Univ Copenhagen, Ctr GeoGenet, Norregade 10, DK-1165 Copenhagen, Denmark

[24] Univ Cambridge, Dept Zool, Downing St, Cambridge CB2 3EJ, England

[25] Sanger Inst, Wellcome Trust Genome Campus, Hinxton CB10 1SA, England

[26] Univ Cambridge, CRUK Cambridge Inst, Robinson Way, Cambridge CB2 0RE, England

[27] CSIC UPF, Inst Evolutionary Biol, Doctor Aiguader 88, Barcelona 08003, Spain

[28] Univ Potsdam, Inst Biochem & Biol, Dept Math & Nat Sci, Evolutionary Adapt Genom, Karl Liebknecht Str 24-25, D-14476 Potsdam, Germany

来源：

SCIENTIFIC REPORTS | 2017年 / 7卷

基金：

加拿大自然科学与工程研究理事会;

关键词：

ANCIENT DNA EXTRACTION; MULTIPLEX AMPLIFICATION; PHYLOGENETIC ANALYSIS; GENOMIC DISSOCIATION; MITOCHONDRIAL GENOME; POPULATION-DYNAMICS; MIGRATION PATTERNS; HYBRID SELECTION; DIVERGENCE; STRATEGIES;

D O I：

10.1038/srep44585

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

Near the end of the Pleistocene epoch, populations of the woolly mammoth (Mammuthus primigenius) were distributed across parts of three continents, from western Europe and northern Asia through Beringia to the Atlantic seaboard of North America. Nonetheless, questions about the connectivity and temporal continuity of mammoth populations and species remain unanswered. We use a combination of targeted enrichment and high-throughput sequencing to assemble and interpret a data set of 143.

引用

页数：10

共 60 条

[1] North American Proboscideans: Mammoths: The state of Knowledge, 2003 [J].

Agenbroad, LD .

QUATERNARY INTERNATIONAL, 2005, 126 :73-92

[2]

[Anonymous], 2002, SE AL SEQUENCE ALIGN

[3] Behavioural inbreeding avoidance in wild African elephants [J].

Archie, Elizabeth A. ;

Hollister-Smith, Julie A. ;

Poole, Joyce H. ;

Lee, Phyllis C. ;

Moss, Cynthia J. ;

Maldonado, Jesus E. ;

Fleischer, Robert C. ;

Alberts, Susan C. .

MOLECULAR ECOLOGY, 2007, 16 (19) :4138-4148

[4] Make the most of your samples: Bayes factor estimators for high-dimensional models of sequence evolution [J].

Baele, Guy ;

Lemey, Philippe ;

Vansteelandt, Stijn .

BMC BIOINFORMATICS, 2013, 14

[5] Genetic structure and extinction of the woolly mammoth, Mammuthus primigenius [J].

Barnes, Ian ;

Shapiro, Beth ;

Lister, Adrian ;

Kuznetsova, Tatiana ;

Sher, Andrei ;

Guthrie, Dale ;

Thomas, Mark G. .

CURRENT BIOLOGY, 2007, 17 (12) :1072-1075

[6]

Bell Christopher J., 2004, P232

[7] Forest elephant mitochondrial genomes reveal that elephantid diversification in Africa tracked climate transitions [J].

Brandt, Adam L. ;

Ishida, Yasuko ;

Georgiadis, Nicholas J. ;

Roca, Alfred L. .

MOLECULAR ECOLOGY, 2012, 21 (05) :1175-1189

[8] Targeted Retrieval and Analysis of Five Neandertal mtDNA Genomes [J].

Briggs, Adrian W. ;

Good, Jeffrey M. ;

Green, Richard E. ;

Krause, Johannes ;

Maricic, Tomislav ;

Stenzel, Udo ;

Lalueza-Fox, Carles ;

Rudan, Pavao ;

Brajkovic, Dejana ;

Kucan, Zeljko ;

Gusic, Ivan ;

Schmitz, Ralf ;

Doronichev, Vladimir B. ;

Golovanova, Liubov V. ;

de la Rasilla, Marco ;

Fortea, Javier ;

Rosas, Antonio ;

Paeaebo, Svante .

SCIENCE, 2009, 325 (5938) :318-321

[9] Biopython']python: freely available Python']Python tools for computational molecular biology and bioinformatics [J].

Cock, Peter J. A. ;

Antao, Tiago ;

Chang, Jeffrey T. ;

Chapman, Brad A. ;

Cox, Cymon J. ;

Dalke, Andrew ;

Friedberg, Iddo ;

Hamelryck, Thomas ;

Kauff, Frank ;

Wilczynski, Bartek ;

de Hoon, Michiel J. L. .

BIOINFORMATICS, 2009, 25 (11) :1422-1423

[10] A case study of apparent conflict between molecular phylogenies: the interrelationships of African elephants [J].

Debruyne, R .

CLADISTICS, 2005, 21 (01) :31-50

← 1 2 3 4 5 6 →