Synthesis, crystal structure, Hirshfeld surface analysis, spectroscopic characterization, reactivity study by DFT and MD approaches and molecular docking study of a novel chalcone derivative

被引:6
|
作者
Arshad, Suhana [1 ]
Pillai, Renjith Raveendran [2 ]
Zainuri, Dian Alwani [1 ]
Khalib, Nuridayanti Che [1 ]
Razak, Ibrahim Abdul [1 ]
Armakovic, Stevan [3 ]
Armakovic, Sanja J. [4 ]
Panicker, C. Yohannan [2 ]
Van Alsenoy, C. [5 ]
机构
[1] Univ Sains Malaysia, Sch Phys, Xray Crystallog Unit, Usm 11800, Penang, Malaysia
[2] TKM Coll Arts & Sci, Dept Phys, Kollam, Kerala, India
[3] Univ Novi Sad, Fac Sci, Dept Phys, Trg D Obradovica 4, Novi Sad 21000, Serbia
[4] Univ Novi Sad, Dept Chem Biochem & Environm Protect, Fac Sci, Trg D Obradovica 3, Novi Sad 21000, Serbia
[5] Univ Antwerp, Dept Chem, B-2610 Antwerp, Belgium
关键词
DFT; Chalcones; XRD; FT-IR; Molecular dynamics; Molecular docking; CARBON-CENTERED RADICALS; MONOAMINE-OXIDASE; HOMO-LUMO; FT-RAMAN; NBO; HYPERPOLARIZABILITY; INHIBITORS; DYNAMICS; DENSITY; AUTOXIDATION;
D O I
10.1016/j.molstruc.2017.01.080
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
In the present study, the title compound named as (E)-1-(4-bromophenyl)-3-(4-(trifluoromethyl)phenyl) prop-2-en-1-one was synthesized and structurally characterized by single-crystal X-ray diffraction. The compound crystallizes in monoclinic crystal system in P2(1)/c space group, unit cell parameters a = 16.7629 (12) angstrom, b = 13.9681 (10) angstrom, c = 5.8740 (4) angstrom, beta = 96.3860 (12)degrees and Z = 4. Hirshfeld surface analysis revealed that the molecular structure is dominated by H center dot center dot center dot H, C center dot center dot center dot H/H center dot center dot center dot C, Br center dot center dot center dot F/F center dot center dot center dot Br and F center dot center dot center dot F contacts. The FT-IR spectrum was recorded and interpreted in details with the aid of Density Functional Theory (DFT) calculations and Potential Energy Distribution (PED) analysis. Average local ionization energies (ALIE) and Fukui functions have been used as quantum-molecular descriptors to locate the molecule sites that could be of importance from the aspect of reactivity. Degradation properties have been assessed by calculations of bond dissociation energies (BDE) for hydrogen abstraction and the rest of the single acyclic bonds, while molecular dynamics (MD) simulations were used in order to calculate radial distribution functions and determine the atoms with significant interactions with water. In order to understand how the title molecule inhibits and hence increases the catalytic efficiency of MOA-B enzyme, molecular docking study was performed. (C) 2017 Elsevier B.V. All rights reserved.
引用
收藏
页码:234 / 246
页数:13
相关论文
共 50 条
  • [41] Crystal structure, spectroscopic characterization, DFT computations and molecular docking study of a synthesized Zn(II) complex
    Gokce, Halil
    Alpaslan, Gokhan
    Alasalvar, Can
    JOURNAL OF COORDINATION CHEMISTRY, 2019, 72 (5-7) : 1075 - 1096
  • [42] Novel quinoline derivatives: Synthesis, spectroscopic characterization, crystal structure, DFT calculations, Hirshfeld surface analysis, anti-tuberculosis activities and ADMET analysis
    Geng, Yiding
    Wang, Shuo
    Zhang, Yixiu
    Liu, Yue
    Tang, Huailin
    Li, Xiaolin
    Gong, Yixia
    JOURNAL OF MOLECULAR STRUCTURE, 2025, 1332
  • [43] Synthesis, spectroscopic characterization, DFT, molecular docking and in vitro antibacterial potential of novel quinoline derivatives
    Bouzian, Younos
    Sert, Yusuf
    Khalid, Karrouchi
    Van Meervelt, Luc
    Chkirate, Karim
    Mahi, Lhassane
    Ahabchane, Noureddine Hamou
    Talbaoui, Ahmed
    Essassi, El Mokhtar
    JOURNAL OF MOLECULAR STRUCTURE, 2021, 1246
  • [44] Synthesis, crystal structure, characterization, Hirshfeld analysis, molecular docking and DFT calculations of 5-Phenylamino-isophthalic acid: A good NLO material
    Fatima, Aysha
    Ali, Arif
    Shabbir, Sadiya
    Khan, Maha
    Mehkoom, Mohd
    Afzal, S. M.
    Ahmad, Musheer
    Althubeiti, Khaled
    Siddiqui, Nazia
    Singh, Meenakshi
    Javed, Saleem
    JOURNAL OF MOLECULAR STRUCTURE, 2022, 1261
  • [45] Synthesis, characterization, and exploration of supramolecular assembly in a 4-aminophenazone derivative: A comprehensive study including hirshfeld surface analysis, computational investigation, and molecular docking
    Tahir, Muhammad Nawaz
    Rashid, Zahid
    Munawar, Khurram Shahzad
    Ashfaq, Muhammad
    Sultan, Akbar
    Islam, Mohammad Shahidul
    Lai, Chin Hung
    JOURNAL OF MOLECULAR STRUCTURE, 2024, 1308
  • [46] Insights into solvation effects, spectroscopic, Hirshfeld surface Analysis, reactivity analysis and anti-Covid-19 ability of doxylamine succinate: Experimental, DFT, MD and docking simulations
    Al-Otaibi, Jamelah S.
    Mary, Y. Sheena
    Mary, Y. Shyma
    Acharjee, Nivedita
    Balachandar, S.
    Yathirajan, H. S.
    JOURNAL OF MOLECULAR LIQUIDS, 2022, 361
  • [48] Facile synthesis, crystal structure, Hirshfeld surface analysis, DFT calculations, IR and UV-visible spectra analyzes, ADMET and molecular docking studies of arylideneisoxazolone derivatives
    Boureghda, Chaima
    Krid, Adel
    Dems, Mohamed Abdesselem
    Boutebdja, Mehdi
    Boulcina, Raouf
    Debache, Abdelmadjid
    JOURNAL OF MOLECULAR STRUCTURE, 2024, 1317
  • [49] Spectroscopic, molecular structure, electronic, Hirshfeld surface, molecular docking, and thermodynamic investigations of trans-4-hydroxy-L-proline by DFT method
    Fatima, Aysha
    Singh, Meenakshi
    Agarwal, Neha
    Verma, Indresh
    Butcher, Ray J.
    Siddiqui, Nazia
    Javed, Saleem
    JOURNAL OF MOLECULAR LIQUIDS, 2021, 343
  • [50] Comprehensive study of a novel cobalt(II) complex: Synthesis, X-ray crystal structure, Hirshfeld surface analysis, computational quantum investigations, and molecular docking insights
    Sabeg, Yasmina
    Benali-Cherif, Rim
    Falek, Wahiba
    Takouachet, Radhwane
    Golea, Lynda
    Aygun, Muhittin
    Benali-Cherif, Nourredine
    POLYHEDRON, 2025, 271