Plasma Proteomics Identify Biomarkers and Pathogenesis of COVID-19

被引:227
|
作者
Shu, Ting [1 ,2 ,3 ,4 ]
Ning, Wanshan [5 ]
Wu, Di [3 ,6 ,7 ]
Xu, Jiqian [8 ]
Han, Qiangqiang [9 ]
Huang, Muhan [3 ,6 ,7 ]
Zou, Xiaojing [8 ]
Yang, Qingyu [1 ,2 ,3 ,4 ]
Yuan, Yang [1 ,2 ,4 ]
Bie, Yuanyuan [3 ,10 ]
Pan, Shangwen [8 ]
Mu, Jingfang [3 ,6 ,7 ]
Han, Yang [1 ,2 ,3 ,4 ]
Yang, Xiaobo [8 ]
Zhou, Hong [1 ,2 ,4 ]
Li, Ruiting [8 ]
Ren, Yujie [3 ,6 ,7 ]
Chen, Xi [9 ]
Yao, Shanglong [11 ,12 ]
Qiu, Yang [3 ,4 ,6 ,7 ,10 ]
Zhang, Ding-Yu [1 ,2 ,4 ,13 ]
Xue, Yu [5 ]
Shang, You [8 ,11 ,12 ,13 ]
Zhou, Xi [3 ,4 ,6 ,7 ,10 ]
机构
[1] Wuhan Jinyintan Hosp, Wuhan Inst Virol, Joint Lab Infect Dis & Hlth, Wuhan 430023, Hubei, Peoples R China
[2] Wuhan Jinyintan Hosp, Wuhan 430023, Hubei, Peoples R China
[3] Chinese Acad Sci, Ctr Biosafety Megasci, Wuhan Inst Virol, State Key Lab Virol, Wuhan 430071, Hubei, Peoples R China
[4] Wuhan Jinyintan Hosp, Ctr Translat Med, Wuhan 430023, Hubei, Peoples R China
[5] Huazhong Univ Sci & Technol HUST, Coll Life Sci & Technol, Ctr Artificial Intelligence Biol, Hubei Bioinformat & Mol Imaging Key Lab,MOE Key L, Wuhan 430074, Hubei, Peoples R China
[6] Chinese Acad Sci, Wuhan Inst Virol, Joint Lab Infect Dis & Hlth, Wuhan 430023, Hubei, Peoples R China
[7] Chinese Acad Sci, Wuhan Jinyintan Hosp, Wuhan 430023, Hubei, Peoples R China
[8] HUST, Tongji Med Coll, Union Hosp, Dept Crit Care Med, Wuhan 430030, Hubei, Peoples R China
[9] SpecAlly Life Technol Co Ltd, Wuhan 430075, Hubei, Peoples R China
[10] Univ Chinese Acad Sci, Beijing 100049, Peoples R China
[11] HUST, Tongji Med Coll, Union Hosp, Inst Anesthesiol & Crit Care Med, Wuhan 430030, Hubei, Peoples R China
[12] Clin Res Ctr Anesthesiol Hubei Prov, Wuhan 430030, Peoples R China
[13] Chinese Acad Sci, Ctr Biosafety Megasci, Wuhan 430071, Hubei, Peoples R China
基金
中国国家自然科学基金;
关键词
L-PLASTIN; FETUIN-B; PROTEIN; DISEASE; FRACTIONATION; MICE;
D O I
10.1016/j.immuni.2020.10.008
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
The coronavirus disease 2019 (COVID-19) pandemic is a global public health crisis. However, little is known about the pathogenesis and biomarkers of COVID-19. Here, we profiled host responses to COVID-19 by performing plasma proteomics of a cohort of COVID-19 patients, including non-survivors and survivors recovered from mild or severe symptoms, and uncovered numerous COVID-19-associated alterations of plasma proteins. We developed a machine-learning-based pipeline to identify 11 proteins as biomarkers and a set of biomarker combinations, which were validated by an independent cohort and accurately distinguished and predicted COVID-19 outcomes. Some of the biomarkers were further validated by enzyme-linked immunosorbent assay (ELISA) using a larger cohort. These markedly altered proteins, including the biomarkers, mediate pathophysiological pathways, such as immune or inflammatory responses, platelet degranulation and coagulation, and metabolism, that likely contribute to the pathogenesis. Our findings provide valuable knowledge about COVID-19 biomarkers and shed light on the pathogenesis and potential therapeutic targets of COVID-19.
引用
收藏
页码:1108 / +
页数:20
相关论文
共 50 条
  • [41] Prognostic Value of Cardiovascular Biomarkers in COVID-19: A Review
    Aboughdir, Maryam
    Kirwin, Thomas
    Khader, Ashiq Abdul
    Wang, Brian
    VIRUSES-BASEL, 2020, 12 (05):
  • [42] Biomarkers for Prognosis and Treatment Response in COVID-19 Patients
    Bivona, Giulia
    Agnello, Luisa
    Ciaccio, Marcello
    ANNALS OF LABORATORY MEDICINE, 2021, 41 (06) : 540 - 548
  • [43] Deep Plasma Proteomics with Data-Independent Acquisition: Clinical Study Protocol Optimization with a COVID-19 Cohort
    Ward, Bradley
    Ruys, Sebastien Pyr Dit
    Balligand, Jean-Luc
    Belkhir, Leila
    Cani, Patrice D.
    Collet, Jean-Francois
    De Greef, Julien
    Dewulf, Joseph P.
    Gatto, Laurent
    Haufroid, Vincent
    Jodogne, Sebastien
    Kabamba, Benoit
    Lingurski, Maxime
    Yombi, Jean Cyr
    Vertommen, Didier
    Elens, Laure
    JOURNAL OF PROTEOME RESEARCH, 2024, 23 (09) : 3806 - 3822
  • [44] Molecular Pathogenesis of Fibrosis, Thrombosis and Surfactant Dysfunction in the Lungs of Severe COVID-19 Patients
    Krygier, Adrian
    Szmajda-Krygier, Dagmara
    Swiechowski, Rafal
    Pietrzak, Jacek
    Wosiak, Agnieszka
    Wodzinski, Damian
    Balcerczak, Ewa
    BIOMOLECULES, 2022, 12 (12)
  • [45] Proteomics and metabonomics analyses of Covid-19 complications in patients with pulmonary fibrosis
    Yang, Jianrong
    Chen, Chunxia
    Chen, Wan
    Huang, Luying
    Fu, Zhao
    Ye, Kun
    Lv, Liwen
    Nong, Zhihuang
    Zhou, Xing
    Lu, Wensheng
    Zhong, Mei
    SCIENTIFIC REPORTS, 2021, 11 (01)
  • [46] Immunological perspectives on the pathogenesis, diagnosis, prevention and treatment of COVID-19
    Ni, Yanghong
    Alu, Aqu
    Lei, Hong
    Wang, Yang
    Wu, Min
    Wei, Xiawei
    MOLECULAR BIOMEDICINE, 2021, 2 (01):
  • [47] Cell deaths: Involvement in the pathogenesis and intervention therapy of COVID-19
    Li, Xue
    Zhang, Ziqi
    Wang, Zhenling
    Gutierrez-Castrellon, Pedro
    Shi, Huashan
    SIGNAL TRANSDUCTION AND TARGETED THERAPY, 2022, 7 (01)
  • [48] COVID-19 Disease and Associated Thrombocytopenia: Pathogenesis and a Clue to the Etiology
    Eissa, Adil Abozaid
    DIAGNOSTICS, 2022, 12 (05)
  • [49] Myocardial Work in Patients Hospitalized With COVID-19: Relation to Biomarkers, COVID-19 Severity, and All-Cause Mortality
    Olsen, Flemming Javier
    Lassen, Mats Christian Hojbjerg
    Skaarup, Kristoffer Grundtvig
    Christensen, Jacob
    Davidovski, Filip Soeskov
    Alhakak, Alia Saed
    Sengelov, Morten
    Nielsen, Anne Bjerg
    Johansen, Niklas Dyrby
    Graff, Claus
    Bundgaard, Henning
    Hassager, Christian
    Jabbari, Reza
    Carlsen, Jorn
    Kirk, Ole
    Lindholm, Matias Greve
    Wiese, Lothar
    Kristiansen, Ole Peter
    Nielsen, Olav W.
    Lindegaard, Birgitte
    Tonder, Niels
    Ulrik, Charlotte Suppli
    Lamberts, Morten
    Sivapalan, Pradeesh
    Gislason, Gunnar
    Iversen, Kasper
    Jensen, Jens Ulrik Staehr
    Schou, Morten
    Svendsen, Jesper Hastrup
    Aalen, John Moene
    Smiseth, Otto Armin
    Remme, Espen Wattenberg
    Biering-Sorensen, Tor
    JOURNAL OF THE AMERICAN HEART ASSOCIATION, 2022, 11 (19):
  • [50] Oxidative stress indexes as biomarkers of the severity in COVID-19 patients
    Liu, Xin
    Chen, Ruohong
    Li, Binghui
    Zhang, Jialiang
    Liu, Peiting
    Li, Bingchu
    Li, Fengfan
    Zhang, Weilin
    Lyu, Xing
    Hu, Min
    INTERNATIONAL JOURNAL OF MEDICAL SCIENCES, 2024, 21 (15): : 3034 - 3045