The complete chloroplast genome of Dipteronia sinensis (Aceraceae), an endangered endemic species to China

被引:4
作者
Zhou, Tao [1 ]
Zhao, Ji-Xiang [1 ]
Yang, Yan-Ci [1 ]
Bai, Guo-Qing [1 ,2 ]
Chen, Chen [1 ]
Zhao, Gui-Fang [1 ]
机构
[1] Northwest Univ, Coll Life Sci, Minist Educ, Key Lab Resource Biol & Biotechnol Western China, 229 Northern Taibai,Rd, Xian 710069, Peoples R China
[2] Xian Bot Garden Shaanxi Prov, Shaanxi Prov Qinling Bashan Mountains Engn Res Ct, Xian, Peoples R China
基金
中国国家自然科学基金;
关键词
Chloroplast genome; Dipteronia sinensis; next-generation sequencing;
D O I
10.3109/19401736.2015.1111352
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The complete chloroplast sequence of D. sinensis was reported in this study. The total length was 157 080 bp containing a pair of 26 766 bp inverted repeat regions (IRa and IRb), which were separated by a small single copy regions and a large single copy regions (SSC and LSC) of 18 093 and 85 455 bp, respectively. A total of 138 functional genes were annotated, which included 90 protein-coding genes, 40 tRNAs, and eight rRNA genes. The overall GC content of the complete chloroplast genome is 37.8% and in LSC, SSC and IR regions were 35.9%, 32.1%, and 42.7%, respectively. The maximum likelihood (ML) phylogenetic analysis revealed that D. sinensis was closely related to A. buergerianum subsp. Ningpoense in Sapindales order.
引用
收藏
页码:123 / 124
页数:2
相关论文
共 9 条
  • [1] SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
    Bankevich, Anton
    Nurk, Sergey
    Antipov, Dmitry
    Gurevich, Alexey A.
    Dvorkin, Mikhail
    Kulikov, Alexander S.
    Lesin, Valery M.
    Nikolenko, Sergey I.
    Son Pham
    Prjibelski, Andrey D.
    Pyshkin, Alexey V.
    Sirotkin, Alexander V.
    Vyahhi, Nikolay
    Tesler, Glenn
    Alekseyev, Max A.
    Pevzner, Pavel A.
    [J]. JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) : 455 - 477
  • [2] Doyle JL., 1990, Focus, V12, P13, DOI DOI 10.2307/2419362
  • [3] Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads-a baiting and iterative mapping approach
    Hahn, Christoph
    Bachmann, Lutz
    Chevreux, Bastien
    [J]. NUCLEIC ACIDS RESEARCH, 2013, 41 (13) : e129
  • [4] NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data
    Patel, Ravi K.
    Jain, Mukesh
    [J]. PLOS ONE, 2012, 7 (02):
  • [5] Tamura K, 2013, MOL BIOL EVOL, V30, P2725, DOI [10.1093/molbev/mst197, 10.1093/molbev/msr121]
  • [6] YANG B, 2014, MATH PROBL ENG, P1
  • [7] Population structure and genetic variation in the genus Dipteronia Oliv. (Aceraceae) endemic to China as revealed by cpSSR analysis
    Yang, J.
    Li, S.
    Sun, G.
    Yuan, Y.
    Zhao, G.
    [J]. PLANT SYSTEMATICS AND EVOLUTION, 2008, 272 (1-4) : 97 - 106
  • [8] Genetic diversity and geographical differentiation of Dipteronia Oliv. (Aceraceae) endemic to China as revealed by AFLP analysis
    Yang, Juan
    Qian, Zeng-Qiang
    Liu, Zhan-Lin
    Li, Shan
    Sun, Gen-Lou
    Zhao, Gui-Fang
    [J]. BIOCHEMICAL SYSTEMATICS AND ECOLOGY, 2007, 35 (09) : 593 - 599
  • [9] Highly effective sequencing whole chloroplast genomes of angiosperms by nine novel universal primer pairs
    Yang, Jun-Bo
    Li, De-Zhu
    Li, Hong-Tao
    [J]. MOLECULAR ECOLOGY RESOURCES, 2014, 14 (05) : 1024 - 1031