Evaluating the Potential for Halogen Bonding in the Oxyanion Hole of Ketosteroid Isomerase Using Unnatural Amino Acid Mutagenesis

被引:49
|
作者
Kraut, Daniel A. [1 ]
Churchill, Michael J. [2 ,3 ]
Dawson, Phillip E. [2 ,3 ]
Herschlag, Daniel [1 ]
机构
[1] Stanford Univ, Dept Biochem, Stanford, CA 94305 USA
[2] Scripps Res Inst, Skaggs Inst Chem Biol, Dept Cell Biol, La Jolla, CA 92037 USA
[3] Scripps Res Inst, Skaggs Inst Chem Biol, Dept Chem, La Jolla, CA 92037 USA
关键词
DELTA(5)-3-KETOSTEROID ISOMERASE; ACTIVE-SITE; HYDROGEN-BONDS; LIGAND-BINDING; T4; LYSOZYME; CATALYSIS; COMPLEXES; SEQUENCE; INSIGHTS; CAVITY;
D O I
10.1021/cb900016q
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
There has recently been an increasing interest in controlling macromolecular conformations and interactions through halogen bonding. Halogen bonds are favorable electrostatic interactions between polarized, electropositive chlorine, bromine, or iodine atoms and electronegative atoms such as oxygen or nitrogen. These interactions have been likened to hydrogen bonds in terms of their favored acceptor molecules, their geometries, and their energetics. We asked whether a halogen bond could replace a hydrogen bond in the oxyanion hole of ketosteroid isomerase, using semisynthetic enzymes containing para-halogenated phenylatanine derivatives to replace the tyrosine hydrogen bond donor. Formation of a halogen bond to the oxyanion in the transition state would be expected to rescue the effects of mutation to phenylalanine, but all of the halogenated enzymes were comparable in activity to the phenylalanine mutant. We conclude that, at least in this active site, a halogen bond cannot functionally replace a hydrogen bond.
引用
收藏
页码:269 / 273
页数:5
相关论文
共 26 条
  • [21] Site-specific incorporation of keto amino acids into functional G protein-coupled receptors using unnatural amino acid mutagenesis
    Ye, Shixin
    Kohrer, Caroline
    Huber, Thomas
    Kazmi, Manija
    Sachdev, Pallavi
    Yan, Elsa C. Y.
    Bhagat, Aditi
    RajBhandary, Uttam L.
    Sakmar, Thomas P.
    JOURNAL OF BIOLOGICAL CHEMISTRY, 2008, 283 (03) : 1525 - 1533
  • [22] Evaluating the Potential of Halogen Bonding in Molecular Design: Automated Scaffold Decoration Using the New Scoring Function XBScore
    Zimmermann, Markus O.
    Lange, Andreas
    Boeckler, Frank M.
    JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2015, 55 (03) : 687 - 699
  • [23] Unraveling the Photoactivation Mechanism of a Light-Activated Adenylyl Cyclase Using Ultrafast Spectroscopy Coupled with Unnatural Amino Acid Mutagenesis
    Collado, Jinnette Tolentino
    Iuliano, James N.
    Pirisi, Katalin
    Jewlikar, Samruddhi
    Adamczyk, Katrin
    Greetham, Gregory M.
    Towrie, Michael
    Tame, Jeremy R. H.
    Meech, Stephen R.
    Tonge, Peter J.
    Lukacs, Andras
    ACS CHEMICAL BIOLOGY, 2022, 17 (09) : 2643 - 2654
  • [24] Interactions of leucine residues at the 9' position of the M2 domain of the ACHR probed using unnatural amino acid mutagenesis.
    Kearney, PC
    Zhong, W
    Nowak, MW
    Silverman, SK
    Zhang, H
    Labarca, C
    Saks, ME
    Sampson, JR
    Gallivan, JP
    Abelson, J
    Davidson, N
    Dougherty, DA
    Lester, HA
    BIOPHYSICAL JOURNAL, 1996, 70 (02) : TUAM5 - TUAM5
  • [25] A Robust Platform for Unnatural Amino Acid Mutagenesis in E. coli Using the Bacterial Tryptophanyl-tRNA synthetase/tRNA pair
    Ficaretta, Elise D.
    Wrobel, Chester J. J.
    Roy, Soumya J. S.
    Erickson, Sarah B.
    Italia, James S.
    Chatterjee, Abhishek
    JOURNAL OF MOLECULAR BIOLOGY, 2022, 434 (08)
  • [26] Functional metabolomics using UPLC-Q/TOF-MS combined with ingenuity pathway analysis as a promising strategy for evaluating the efficacy and discovering amino acid metabolism as a potential therapeutic mechanism-related target for geniposide against alcoholic liver disease
    Qiu, Shi
    Zhang, Ai-hua
    Guan, Yu
    Sun, Hui
    Zhang, Tian-lei
    Han, Ying
    Yan, Guang-li
    Wang, Xi-jun
    RSC ADVANCES, 2020, 10 (05) : 2677 - 2690