Evaluating the Potential for Halogen Bonding in the Oxyanion Hole of Ketosteroid Isomerase Using Unnatural Amino Acid Mutagenesis

被引:49
|
作者
Kraut, Daniel A. [1 ]
Churchill, Michael J. [2 ,3 ]
Dawson, Phillip E. [2 ,3 ]
Herschlag, Daniel [1 ]
机构
[1] Stanford Univ, Dept Biochem, Stanford, CA 94305 USA
[2] Scripps Res Inst, Skaggs Inst Chem Biol, Dept Cell Biol, La Jolla, CA 92037 USA
[3] Scripps Res Inst, Skaggs Inst Chem Biol, Dept Chem, La Jolla, CA 92037 USA
关键词
DELTA(5)-3-KETOSTEROID ISOMERASE; ACTIVE-SITE; HYDROGEN-BONDS; LIGAND-BINDING; T4; LYSOZYME; CATALYSIS; COMPLEXES; SEQUENCE; INSIGHTS; CAVITY;
D O I
10.1021/cb900016q
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
There has recently been an increasing interest in controlling macromolecular conformations and interactions through halogen bonding. Halogen bonds are favorable electrostatic interactions between polarized, electropositive chlorine, bromine, or iodine atoms and electronegative atoms such as oxygen or nitrogen. These interactions have been likened to hydrogen bonds in terms of their favored acceptor molecules, their geometries, and their energetics. We asked whether a halogen bond could replace a hydrogen bond in the oxyanion hole of ketosteroid isomerase, using semisynthetic enzymes containing para-halogenated phenylatanine derivatives to replace the tyrosine hydrogen bond donor. Formation of a halogen bond to the oxyanion in the transition state would be expected to rescue the effects of mutation to phenylalanine, but all of the halogenated enzymes were comparable in activity to the phenylalanine mutant. We conclude that, at least in this active site, a halogen bond cannot functionally replace a hydrogen bond.
引用
收藏
页码:269 / 273
页数:5
相关论文
共 26 条
  • [1] Using Unnatural Amino Acids to Probe the Energetics of Oxyanion Hole Hydrogen Bonds in the Ketosteroid Isomerase Active Site
    Natarajan, Aditya
    Schwans, Jason P.
    Herschlag, Daniel
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2014, 136 (21) : 7643 - 7654
  • [2] Evaluating the Catalytic Contribution from the Oxyanion Hole in Ketosteroid Isomerase
    Schwans, Jason P.
    Sunden, Fanny
    Gonzalez, Ana
    Tsai, Yingssu
    Herschlag, Daniel
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2011, 133 (50) : 20052 - 20055
  • [3] Testing electrostatic complementarity in enzyme catalysis: Hydrogen bonding in the ketosteroid isomerase oxyanion hole
    Kraut, DA
    Sigala, PA
    Pybus, B
    Liu, CW
    Ringe, D
    Petsko, GA
    Herschlag, D
    PLOS BIOLOGY, 2006, 4 (04) : 501 - 519
  • [4] Evaluating the Catalytic Contribution from the Oxyanion Hole in Ketosteroid Isomerase (vol 133, pg 20052, 2011)
    Schwans, Jason P.
    Sunden, Fanny
    Gonzalez, Ana
    Tsai, Yingssu
    Herschlag, Daniel
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2016, 138 (24) : 7801 - 7802
  • [5] Testing geometrical discrimination within an enzyme active site: Constrained hydrogen bonding in the ketosteroid isomerase oxyanion hole
    Sigala, Paul A.
    Kraut, Daniel A.
    Caaveiro, Jose M. M.
    Pybus, Brandon
    Ruben, Eliza A.
    Ringe, Dagmar
    Petsko, Gregory A.
    Herschlag, Daniel
    Journal of the American Chemical Society, 2008, 130 (41): : 13696 - 13708
  • [6] An experimental approach to evaluating the role of backbone interactions in proteins using unnatural amino acid mutagenesis
    Koh, JT
    Cornish, VW
    Schultz, PG
    BIOCHEMISTRY, 1997, 36 (38) : 11314 - 11322
  • [7] Using Unnatural Amino Acid Mutagenesis To Probe the Regulation of PRMT1
    Rust, Heather L.
    Subramanian, Venkataraman
    West, Graham M.
    Young, Douglas D.
    Schultz, Peter G.
    Thompson, Paul R.
    ACS CHEMICAL BIOLOGY, 2014, 9 (03) : 649 - 655
  • [8] Testing Models for the Slow Inactivated State using Unnatural Amino Acid Mutagenesis
    Valiyaveetil, Francis
    Komarov, Alexander
    Devaraneni, Prasanna
    BIOPHYSICAL JOURNAL, 2012, 102 (03) : 530A - 530A
  • [9] Unnatural Amino Acid Mutagenesis of GPCRs Using Amber Codon Suppression and Bioorthogonal Labeling
    Huber, Thomas
    Naganathan, Saranga
    Tian, He
    Ye, Shixin
    Sakmar, Thomas P.
    G PROTEIN COUPLED RECEPTORS: STRUCTURE, 2013, 520 : 281 - 305
  • [10] Unnatural Amino Acid Mutagenesis Reveals the Critical Role of Hydrogen Bonding for Binding of Retigabine in the Pore of KCNQ Channels
    Pless, Stephan A.
    Yau, Michael
    Galpin, Jason D.
    Ahern, Christopher A.
    Kurata, Harley T.
    BIOPHYSICAL JOURNAL, 2014, 106 (02) : 143A - 143A