Identification and expression analyses of the alanine aminotransferase (AlaAT) gene family in poplar seedlings

Alanine aminotransferase (AlaAT, E. C. 2.6.1.2) catalyzes the reversible conversion of pyruvate and glutamate to alanine and alpha-oxoglutarate. The AlaAT gene family has been well studied in some herbaceous plants, but has not been well characterized in woody plants. In this study, we identified four alanine aminotransferase homologues in Populus trichocarpa, which could be classified into two subgroups, A and B. AlaAT3 and AlaAT4 in subgroup A encode AlaAT, while AlaAT1 and AlaAT2 in subgroup B encode glutamate: glyoxylate aminotransferase (GGAT), which catalyzes the reaction of glutamate and glyoxylate to a-oxoglutarate and glycine. Four AlaAT genes were cloned from P. simonii x P. nigra. PnAlaAT1 and PnAlaAT2 were expressed predominantly in leaves and induced by exogenous nitrogen and exhibited a diurnal fluctuation in leaves, but was inhibited in roots. PnAlaAT3 and PnAlaAT4 were mainly expressed in roots, stems and leaves, and was induced by exogenous nitrogen. The expression of PnAlaAT3 gene could be regulated by glutamine or its related metabolites in roots. Our results suggest that PnAlaAT3 gene may play an important role in nitrogen metabolism and is regulated by glutamine or its related metabolites in the roots of P. simonii x P. nigra.