Agarolytic bacterium Persicobacter sp CCB-QB2 exhibited a diauxic growth involving galactose utilization pathway

被引:9
作者
Furusawa, Go [1 ]
Lau, Nyok-Sean [1 ]
Suganthi, Appalasamy [1 ,2 ]
Amirul, Abdullah Al-Ashraf [1 ,3 ]
机构
[1] Univ Sains Malaysia, Ctr Chem Biol, Bayan Lepas, Malaysia
[2] Univ Malaysia Kelantan, Fac Earth Sci, Jeli, Malaysia
[3] Univ Sains Malaysia, Sch Biol Sci, Minden, Malaysia
来源
MICROBIOLOGYOPEN | 2017年 / 6卷 / 01期
关键词
agarase; agarolytic bacterium; diauxic growth; leloir pathway; Persicobacter; CARBOHYDRATE-BINDING MODULES; AGARIVORANS SP HZ105; SP STRAIN JT0107; BETA-AGARASE; MARINE BACTERIUM; EXTRACELLULAR AGARASE; CRYSTAL-STRUCTURE; SP-NOV; BIOCHEMICAL-CHARACTERIZATION; PSEUDOMONAS-ATLANTICA;
D O I
10.1002/mbo3.405
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
The agarolytic bacterium Persicobacter sp. CCB-QB2 was isolated from seaweed (genus Ulva) collected from a coastal area of Malaysia. Here, we report a high-quality draft genome sequence for QB2. The Rapid Annotation using Subsystem Technology (RAST) annotation server identified four -agarases (PdAgaA, PdAgaB, PdAgaC, and PdAgaD) as well as galK, galE, and phosphoglucomutase, which are related to the Leloir pathway. Interestingly, QB2 exhibited a diauxic growth in the presence of two kinds of nutrients, such as tryptone and agar. In cells grown with agar, the profiles of agarase activity and growth rate were very similar. galK, galE, and phosphoglucomutase genes were highly expressed in the second growth phase of diauxic growth, indicating that QB2 cells use galactose hydrolyzed from agar by its agarases and exhibit nutrient prioritization. This is the first report describing diauxic growth for agarolytic bacteria. QB2 is a potential novel model organism for studying diauxic growth in environmental bacteria.
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页数:11
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共 75 条
[51]   Molecular analysis of the gat genes from Escherichia coli and of their roles in galactitol transport and metabolism [J].
Nobelmann, B ;
Lengeler, JW .
JOURNAL OF BACTERIOLOGY, 1996, 178 (23) :6790-6795
[52]   Cloning, purification and biochemical characterization of beta agarase from the marine bacterium Pseudoalteromonas sp AG4 [J].
Oh, Chulhong ;
Nikapitiya, Chamilani ;
Lee, Youngdeuk ;
Whang, Ilson ;
Kim, Se-Jae ;
Kang, Do-Hyung ;
Lee, Jehee .
JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY, 2010, 37 (05) :483-494
[53]   Cloning, expression, and characterization of a glycoside hydrolase family 86 β-agarase from a deep-sea Microbulbifer-like isolate [J].
Ohta, Y ;
Hatada, Y ;
Nogi, Y ;
Li, ZJ ;
Ito, S ;
Horikoshi, K .
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 2004, 66 (03) :266-275
[54]   The crystal structure of the family 6 carbohydrate binding module from Cellvibrio mixtus endoglucanase 5A in complex with oligosaccharides reveals two distinct binding sites with different ligand Specificities [J].
Pires, VMR ;
Henshaw, JL ;
Prates, JAM ;
Bolam, DN ;
Ferreira, LMA ;
Fontes, CMGA ;
Henrissat, B ;
Planas, A ;
Gilbert, HJ ;
Czjzek, M .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2004, 279 (20) :21560-21568
[55]   Bivalent Carbohydrate Binding Is Required for Biological Activity of Clitocybe nebularis Lectin (CNL), the N, N′-Diacetyllactosediamine (GalNAcβ1-4GlcNAc, LacdiNAc)-specific Lectin from Basidiomycete C. nebularis [J].
Pohleven, Jure ;
Renko, Miha ;
Magister, Spela ;
Smith, David F. ;
Kuenzler, Markus ;
Strukelj, Borut ;
Turk, Dusan ;
Kos, Janko ;
Sabotic, Jerica .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2012, 287 (13) :10602-10612
[56]   PURIFICATION AND CHARACTERIZATION OF THE ALPHA-AGARASE FROM ALTEROMONAS-AGARLYTICUS (CATALDI) COMB-NOV, STRAIN GJ1B [J].
POTIN, P ;
RICHARD, C ;
ROCHAS, C ;
KLOAREG, B .
EUROPEAN JOURNAL OF BIOCHEMISTRY, 1993, 214 (02) :599-607
[57]   Discovery and structural characterization of a novel glycosidase family of marine origin [J].
Rebuffet, Etienne ;
Groisillier, Agnes ;
Thompson, Andrew ;
Jeudy, Alexandra ;
Barbeyron, Tristan ;
Czjzek, Mirjam ;
Michel, Gurvan .
ENVIRONMENTAL MICROBIOLOGY, 2011, 13 (05) :1253-1270
[59]   Flavobacterium johnsoniae gldN and gldO Are Partially Redundant Genes Required for Gliding Motility and Surface Localization of SprB [J].
Rhodes, Ryan G. ;
Samarasam, Mudiarasan Napoleon ;
Shrivastava, Abhishek ;
van Baaren, Jessica M. ;
Pochiraju, Soumya ;
Bollampalli, Sreelekha ;
McBride, Mark J. .
JOURNAL OF BACTERIOLOGY, 2010, 192 (05) :1201-1211
[60]   THE NEIGHBOR-JOINING METHOD - A NEW METHOD FOR RECONSTRUCTING PHYLOGENETIC TREES [J].
SAITOU, N ;
NEI, M .
MOLECULAR BIOLOGY AND EVOLUTION, 1987, 4 (04) :406-425