Imputation of orofacial clefting data identifies novel risk loci and sheds light on the genetic background of cleft lip 6 cleft palate and cleft palate only

被引:83
作者
Ludwig, Kerstin U. [1 ,2 ]
Boehmer, Anne C. [1 ,2 ]
Bowes, John [3 ]
Nikolic, Milos [4 ,5 ]
Ishorst, Nina [1 ,2 ]
Wyatt, Niki [6 ]
Hammond, Nigel L. [6 ]
Goelz, Lina [7 ]
Thieme, Frederic [1 ,2 ]
Barth, Sandra [1 ,2 ]
Schuenke, Hannah [1 ,2 ]
Klamt, Johanna [1 ,2 ]
Spielmann, Malte [8 ,9 ,10 ]
Aldhorae, Khalid [11 ]
Rojas-Martinez, Augusto [12 ,13 ]
Noethen, Markus M. [1 ,2 ]
Rada-Iglesias, Alvaro [4 ,5 ]
Dixon, Michael J. [6 ]
Knapp, Michael [14 ]
Mangold, Elisabeth [1 ]
机构
[1] Univ Bonn, Inst Human Genet, D-53127 Bonn, Germany
[2] Univ Bonn, Life & Brain Ctr, Dept Genom, D-53127 Bonn, Germany
[3] Univ Manchester, Arthritis Res UK Ctr Genet & Genom, Manchester M13 9PT, Lancs, England
[4] Univ Cologne, Ctr Mol Med Cologne, D-50931 Cologne, Germany
[5] Univ Cologne, Cologne Excellence Cluster Cellular Stress Respon, D-50931 Cologne, Germany
[6] Univ Manchester, Fac Biol Med & Hlth, Manchester M13 9PT, Lancs, England
[7] Univ Bonn, Dept Orthodont, D-53111 Bonn, Germany
[8] Max Planck Inst Mol Genet, RG Dev & Dis, D-14195 Berlin, Germany
[9] Charite, Inst Med & Human Genet, D-13353 Berlin, Germany
[10] Charite, BCRT, D-13353 Berlin, Germany
[11] Thamar Univ, Coll Dent, Dept Orthodont, Thamar, Yemen
[12] Sch Med, Tecnol Monterrey, Monterrey 64460, Mexico
[13] Univ Autonoma Nuevo Leon, Ctr Invest Desarrollo Ciencias Salud, Monterrey 64460, Mexico
[14] Univ Bonn, Inst Med Biometry Informat & Epidemiol, D-53127 Bonn, Germany
关键词
GENOME-WIDE ASSOCIATION; SUSCEPTIBILITY LOCI; THYROID-CANCER; ORAL CLEFTS; VARIANTS; GWAS; ENHANCERS; METAANALYSIS; DISRUPTION; MUTATIONS;
D O I
10.1093/hmg/ddx012
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Nonsyndromic cleft lip with or without cleft palate (nsCL/P) is among the most common human birth defects with multifactorial etiology. Here, we present results from a genome-wide imputation study of nsCL/P in which, after adding replication cohort data, four novel risk loci for nsCL/P are identified ( at chromosomal regions 2p21, 14q22, 15q24 and 19p13). On a systematic level, we show that the association signals within this high-density dataset are enriched in functionally-relevant genomic regions that are active in both human neural crest cells (hNCC) and mouse embryonic craniofacial tissue.
引用
收藏
页码:829 / 842
页数:14
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