Pattern recognition for predictive, preventive, and personalized medicine in cancer

被引:89
作者
Cheng, Tingting [1 ,2 ,3 ]
Zhan, Xianquan [1 ,2 ,3 ,4 ]
机构
[1] Cent S Univ, Xiangya Hosp, Chinese Ministry Hlth, Key Lab Canc Prote, 87 Xiangya Rd, Changsha 410008, Hunan, Peoples R China
[2] Cent S Univ, Xiangya Hosp, Hunan Engn Lab Struct Biol & Drug Design, 87 Xiangya Rd, Changsha 410008, Hunan, Peoples R China
[3] Cent S Univ, Xiangya Hosp, State Local Joint Engn Lab Anticancer Drugs, 87 Xiangya Rd, Changsha 410008, Hunan, Peoples R China
[4] Cent S Univ, State Key Lab Med Genet, 88 Xiangya Rd, Changsha 410008, Hunan, Peoples R China
来源
EPMA JOURNAL | 2017年 / 8卷 / 01期
基金
中国国家自然科学基金;
关键词
Pattern recognition; Predictive preventive personalized medicine; Genomics; Transcriptomics; Proteomics; Peptidomics; Metabolomics; Radiomics; Systems biology; CIRCULATING NUCLEIC-ACIDS; LONG NONCODING RNAS; BREAST-CANCER; COLORECTAL-CANCER; NASOPHARYNGEAL CARCINOMA; POTENTIAL BIOMARKER; CLINICAL BIOMARKERS; GENETIC-VARIATION; LUNG-CANCER; COPY NUMBER;
D O I
10.1007/s13167-017-0083-9
中图分类号
R5 [内科学];
学科分类号
1002 ; 100201 ;
摘要
Predictive, preventive, and personalized medicine (PPPM) is the hot spot and future direction in the field of cancer. Cancer is a complex, whole-body disease that involved multi-factors, multi-processes, and multi-consequences. A series of molecular alterations at different levels of genes (genome), RNAs (transcriptome), proteins (proteome), peptides (peptidome), metabolites (metabolome), and imaging characteristics (radiome) that resulted from exogenous and endogenous carcinogens are involved in tumorigenesis and mutually associate and function in a network system, thus determines the difficulty in the use of a single molecule as biomarker for personalized prediction, prevention, diagnosis, and treatment for cancer. A key molecule-panel is necessary for accurate PPPM practice. Pattern recognition is an effective methodology to discover key molecule-panel for cancer. The modern omics, computation biology, and systems biology technologies lead to the possibility in recognizing really reliable molecular pattern for PPPM practice in cancer. The present article reviewed the pathophysiological basis, methodology, and perspective usages of pattern recognition for PPPM in cancer so that our previous opinion on multi-parameter strategies for PPPM in cancer is translated into real research and development of PPPM or precision medicine (PM) in cancer.
引用
收藏
页码:51 / 60
页数:10
相关论文
共 88 条
  • [1] Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach
    Aerts, Hugo J. W. L.
    Velazquez, Emmanuel Rios
    Leijenaar, Ralph T. H.
    Parmar, Chintan
    Grossmann, Patrick
    Cavalho, Sara
    Bussink, Johan
    Monshouwer, Rene
    Haibe-Kains, Benjamin
    Rietveld, Derek
    Hoebers, Frank
    Rietbergen, Michelle M.
    Leemans, C. Rene
    Dekker, Andre
    Quackenbush, John
    Gillies, Robert J.
    Lambin, Philippe
    [J]. NATURE COMMUNICATIONS, 2014, 5
  • [2] Role of Long Noncoding RNAs in Neoplasia: Special Emphasis on Prostate Cancer
    Alahari, S. V.
    Eastlack, S. C.
    Alahari, S. K.
    [J]. INTERNATIONAL REVIEW OF CELL AND MOLECULAR BIOLOGY, VOL 324, 2016, 324 : 229 - 254
  • [3] MicroRNA functions in animal development and human disease
    Alvarez-Garcia, I
    Miska, EA
    [J]. DEVELOPMENT, 2005, 132 (21): : 4653 - 4662
  • [4] Inferring copy number and genotype in tumour exome data
    Amarasinghe, Kaushalya C.
    Li, Jason
    Hunter, Sally M.
    Ryland, Georgina L.
    Cowin, Prue A.
    Campbell, Ian G.
    Halgamuge, Saman K.
    [J]. BMC GENOMICS, 2014, 15
  • [5] MicroRNA signatures: clinical biomarkers for the diagnosis and treatment of breast cancer
    Andorfer, Cathy A.
    Necela, Brian M.
    Thompson, E. Aubrey
    Perez, Edith A.
    [J]. TRENDS IN MOLECULAR MEDICINE, 2011, 17 (06) : 313 - 319
  • [6] Detection of Circulating Tumor DNA in Early- and Late-Stage Human Malignancies
    Bettegowda, Chetan
    Sausen, Mark
    Leary, Rebecca J.
    Kinde, Isaac
    Wang, Yuxuan
    Agrawal, Nishant
    Bartlett, Bjarne R.
    Wang, Hao
    Luber, Brandon
    Alani, Rhoda M.
    Antonarakis, Emmanuel S.
    Azad, Nilofer S.
    Bardelli, Alberto
    Brem, Henry
    Cameron, John L.
    Lee, Clarence C.
    Fecher, Leslie A.
    Gallia, Gary L.
    Gibbs, Peter
    Le, Dung
    Giuntoli, Robert L.
    Goggins, Michael
    Hogarty, Michael D.
    Holdhoff, Matthias
    Hong, Seung-Mo
    Jiao, Yuchen
    Juhl, Hartmut H.
    Kim, Jenny J.
    Siravegna, Giulia
    Laheru, Daniel A.
    Lauricella, Calogero
    Lim, Michael
    Lipson, Evan J.
    Marie, Suely Kazue Nagahashi
    Netto, George J.
    Oliner, Kelly S.
    Olivi, Alessandro
    Olsson, Louise
    Riggins, Gregory J.
    Sartore-Bianchi, Andrea
    Schmidt, Kerstin
    Shih, Ie-Ming
    Oba-Shinjo, Sueli Mieko
    Siena, Salvatore
    Theodorescu, Dan
    Tie, Jeanne
    Harkins, Timothy T.
    Veronese, Silvio
    Wang, Tian-Li
    Weingart, Jon D.
    [J]. SCIENCE TRANSLATIONAL MEDICINE, 2014, 6 (224)
  • [7] Mechanisms of alternative pre-messenger RNA splicing
    Black, DL
    [J]. ANNUAL REVIEW OF BIOCHEMISTRY, 2003, 72 : 291 - 336
  • [8] biDCG: A New Method for Discovering Global Features of DNA Microarray Data via an Iterative Re-Clustering Procedure
    Chen, Chia-Pei
    Fushing, Hsieh
    Atwill, Rob
    Koehl, Patrice
    [J]. PLOS ONE, 2014, 9 (07):
  • [9] microRNA-guided posttranscriptional gene regulation
    Chen, PY
    Meister, G
    [J]. BIOLOGICAL CHEMISTRY, 2005, 386 (12) : 1205 - 1218
  • [10] Circulating tumor DNA: a promising biomarker in the liquid biopsy of cancer
    Cheng, Feifei
    Su, Li
    Qian, Cheng
    [J]. ONCOTARGET, 2016, 7 (30) : 48832 - 48841