The Faces of Fungi database: fungal names linked with morphology, phylogeny and human impacts

被引:779
作者
Jayasiri, Subashini C. [1 ]
Hyde, Kevin D. [1 ,2 ,3 ]
Ariyawansa, Hiran A. [1 ,4 ]
Bhat, Jayarama [5 ,6 ]
Buyck, Bart [7 ]
Cai, Lei [8 ]
Dai, Yu-Cheng [9 ]
Abd-Elsalam, Kamel A. [1 ,10 ]
Ertz, Damien [11 ,12 ]
Hidayat, Iman [13 ]
Jeewon, Rajesh [14 ]
Jones, E. B. Gareth [3 ]
Bahkali, Ali H. [3 ]
Karunarathna, Samantha C. [1 ,2 ]
Liu, Jian-Kui [1 ,4 ]
Luangsa-ard, J. Jennifer [15 ]
Lumbsch, H. Thorsten [16 ]
Maharachchikumbura, Sajeewa S. N. [1 ,4 ]
McKenzie, Eric H. C. [17 ]
Moncalvo, Jean-Marc [18 ,19 ]
Ghobad-Nejhad, Masoomeh [20 ]
Nilsson, Henrik [21 ]
Pang, Ka-Lai [22 ,23 ]
Pereira, Olinto L. [24 ]
Phillips, Alan J. L. [25 ]
Raspe, Olivier [11 ,12 ]
Rollins, Adam W. [26 ,27 ]
Romero, Andrea I. [28 ]
Etayo, Javier [29 ]
Selcuk, Faruk [30 ]
Stephenson, Steven L. [31 ]
Suetrong, Satinee [32 ]
Taylor, Joanne E. [33 ]
Tsui, Clement K. M. [34 ]
Vizzini, Alfredo [35 ]
Abdel-Wahab, Mohamed A. [36 ]
Wen, Ting-Chi [37 ]
Boonmee, Saranyaphat [1 ]
Dai, Dong Qin [1 ,2 ]
Daranagama, Dinushani A. [1 ,8 ]
Dissanayake, Asha J. [1 ,38 ]
Ekanayaka, Anusha H. [1 ]
Fryar, S. C. [39 ]
Hongsanan, Sinang [1 ]
Jayawardena, Ruvishika S. [1 ,38 ]
Li, Wen-Jing [1 ,2 ]
Perera, Rekhani H. [1 ]
Phookamsak, R. [1 ]
De Silva, Nimali I. [40 ]
Thambugala, Kasun M. [1 ,4 ]
机构
[1] Mae Fah Luang Univ, Ctr Excellence Fungal Res, Chiang Rai 57100, Thailand
[2] World Agro Forestry Ctr East & Cent Asia Off, Kunming 650201, Peoples R China
[3] King Saud Univ, Coll Sci, Dept Bot & Microbiol, Riyadh 1145, Saudi Arabia
[4] Guizhou Acad Agr Sci, Guizhou Key Lab Agr Biotechnol, Guiyang 550006, Guizhou, Peoples R China
[5] Azad Housing Soc, Curca 403108, Goa, India
[6] Goa Univ, Dept Bot, Taleigao Plateau 403206, Goa, India
[7] CNRS MNHN UPMC EPHE, UMR 7205, Museum Natl Hist Nat, Dept Systemat & Evolut,ISYEB,CP 39, F-75005 Paris, France
[8] Chinese Acad Sci, Inst Microbiol, State Key Lab Mycol, Beijing, Peoples R China
[9] Beijing Forestry Univ, Inst Microbiol, Beijing 100083, Peoples R China
[10] Agr Res Ctr, Plant Pathol Res Inst, Giza 12619, Egypt
[11] Bot Garden Meise, Dept Bryophytes Thallophytes BT, B-1860 Meise, Belgium
[12] Direct Gen Enseignement Non Obligatoire & Rech Sc, Federat Wallonie Bruxelles, B-1080 Brussels, Belgium
[13] Indonesian Inst Sci LIPI, Div Microbiol, Biol Res Ctr, Cibinong 16911, West Java, Indonesia
[14] Univ Mauritius, Fac Sci, Dept Hlth Sci, Reduit, Mauritius
[15] Natl Sci & Technol Dev Agcy, BIOTEC, Microbe Interact Lab BMIT, Amphoe Khlong Luang 12120, Pathum Thani, Thailand
[16] Field Museum, Sci & Educ, Chicago, IL 60605 USA
[17] Manaaki Whenua Landcare Res, Auckland, New Zealand
[18] Univ Toronto, Dept Nat Hist, Royal Ontario Museum, Toronto, ON M5S 2C6, Canada
[19] Univ Toronto, Dept Ecol & Evolutionary Biol, Toronto, ON M5S 2C6, Canada
[20] Iranian Res Org Sci & Technol, Dept Biotechnol, Tehran, Iran
[21] Univ Gothenburg, Dept Biol & Environm Sci, S-40530 Gothenburg, Sweden
[22] Natl Taiwan Ocean Univ, Inst Marine Biol, Keelung 20224, Taiwan
[23] Natl Taiwan Ocean Univ, Ctr Excellence Oceans, Keelung 20224, Taiwan
[24] Univ Fed Vicosa, Dept Fitopatol, BR-36570900 Vicosa, MG, Brazil
[25] Univ Nova Lisboa, UCIBIO REQUIMTE, Dept Ciencias Vida, Fac Ciencias & Tecnol, P-2829516 Caparica, Portugal
[26] Lincoln Mem Univ, Dept Biol, Harrogate, TN 37752 USA
[27] Lincoln Mem Univ, Cumberland Mt Res Ctr, Harrogate, TN 37752 USA
[28] Consejo Nacl Invest Cient & Tecn, PROPLAME PRHIDEB, Dep Biodiversidad & Biol Expt, Fac Ciencias Exactas & Nat UBA, Buenos Aires, DF, Argentina
[29] Inst ES Zizur, Dept Biol & Geol English, Navarra 31180, Spain
[30] Ahi Evran Univ, Dept Biol, Sci & Arts Fac, Kirsehir, Turkey
[31] Univ Arkansas, Dept Biol Sci, Fayetteville, AR 72701 USA
[32] Natl Sci & Technol Dev Agcy, Fungal Biodivers Lab BFBD, BIOTEC, Amphoe Khlong Luang 12120, Pathum Thani, Thailand
[33] Royal Bot Garden Edinburgh, Edinburgh EH3 5LR, Midlothian, Scotland
[34] Univ British Columbia, Dept Pathol & Lab Med, Vancouver, BC V6T 1Z1, Canada
[35] Univ Turin, Dept Life Sci & Syst Biol, I-10125 Turin, Italy
[36] Sohag Univ, Dept Bot & Microbiol, Fac Sci, Sohag 82524, Egypt
[37] Guizhou Univ, Engn Res Ctr Southwest Biopharmaceut Resources, Minist Educ, Guiyang 550025, Guizhou Provinc, Peoples R China
[38] Beijing Acad Agr & Forestry Sci, Inst Plant & Environm Protect, Beijing 10097, Peoples R China
[39] Flinders Univ S Australia, Sch Biol, Adelaide, SA 5001, Australia
[40] Chiang Mai Univ, Dept Biol, Fac Sci, Chiang Mai 50200, Thailand
[41] Yunnan Acad Agr Sci, Biotechnol & Germplasm Resources Inst, Kunming 650223, Peoples R China
基金
加拿大自然科学与工程研究理事会;
关键词
Classification; Database; FacesofFungi; Fungi; Phylogeny; Taxonomy; POLYMERASE-CHAIN-REACTION; RIBOSOMAL DNA-SEQUENCES; MOLECULAR PHYLOGENY; MULTILOCUS PHYLOGENY; SPECIES RECOGNITION; KINGDOM FUNGI; BACKBONE TREE; PESTALOTIOPSIS; CLASSIFICATION; IDENTIFICATION;
D O I
10.1007/s13225-015-0351-8
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Taxonomic names are key links between various databases that store information on different organisms. Several global fungal nomenclural and taxonomic databases (notably Index Fungorum, Species Fungorum and MycoBank) can be sourced to find taxonomic details about fungi, while DNA sequence data can be sourced from NCBI, EBI and UNITE databases. Although the sequence data may be linked to a name, the quality of the metadata is variable and generally there is no corresponding link to images, descriptions or herbarium material. There is generally no way to establish the accuracy of the names in these genomic databases, other than whether the submission is from a reputable source. To tackle this problem, a new database (FacesofFungi), accessible at www.facesoffungi.org (FoF) has been established. This fungal database allows deposition of taxonomic data, phenotypic details and other useful data, which will enhance our current taxonomic understanding and ultimately enable mycologists to gain better and updated insights into the current fungal classification system. In addition, the database will also allow access to comprehensive metadata including descriptions of voucher and type specimens. This database is user-friendly, providing links and easy access between taxonomic ranks, with the classification system based primarily on molecular data (from the literature and via updated web-based phylogenetic trees), and to a lesser extent on morphological data when molecular data are unavailable. In FoF species are not only linked to the closest phylogenetic representatives, but also relevant data is provided, wherever available, on various applied aspects, such as ecological, industrial, quarantine and chemical uses. The data include the three main fungal groups (Ascomycota, Basidiomycota, Basal fungi) and fungus-like organisms. The FoF webpage is an output funded by the Mushroom Research Foundation which is an NGO with seven directors with mycological expertise. The webpage has 76 curators, and with the help of these specialists, FoF will provide an updated natural classification of the fungi, with illustrated accounts of species linked to molecular data. The present paper introduces the FoF database to the scientific community and briefly reviews some of the problems associated with classification and identification of the main fungal groups. The structure and use of the database is then explained. We would like to invite all mycologists to contribute to these web pages.
引用
收藏
页码:3 / 18
页数:16
相关论文
共 179 条
  • [1] The UNITE database for molecular identification of fungi - recent updates and future perspectives
    Abarenkov, Kessy
    Nilsson, R. Henrik
    Larsson, Karl-Henrik
    Alexander, Ian J.
    Eberhardt, Ursula
    Erland, Susanne
    Hoiland, Klaus
    Kjoller, Rasmus
    Larsson, Ellen
    Pennanen, Taina
    Sen, Robin
    Taylor, Andy F. S.
    Tedersoo, Leho
    Ursing, Bjorn M.
    Vralstad, Trude
    Liimatainen, Kare
    Peintner, Ursula
    Koljalg, Urmas
    [J]. NEW PHYTOLOGIST, 2010, 186 (02) : 281 - 285
  • [2] Aime MC., 2014, Mycota, V2, P271, DOI [10.1007/978-3-642-55318-910, DOI 10.1007/978-3-642-55318-910, DOI 10.1007/978-3-642-55318-9_10]
  • [3] PRINCIPLES AND APPLICATIONS OF POLYMERASE CHAIN REACTION IN MEDICAL DIAGNOSTIC FIELDS: A REVIEW
    Alves Valones, Marcela Agne
    Guimaraes, Rafael Lima
    Cavalcanti Brandao, Lucas Andre
    Eleuterio de Souza, Paulo Roberto
    Tavares Carvalho, Alessandra de Albuquerque
    Crovela, Sergio
    [J]. BRAZILIAN JOURNAL OF MICROBIOLOGY, 2009, 40 (01) : 1 - 11
  • [4] BIOLOGICAL SPECIES OF ARMILLARIA-MELLEA IN NORTH-AMERICA
    ANDERSON, JB
    ULLRICH, RC
    [J]. MYCOLOGIA, 1979, 71 (02) : 402 - 414
  • [5] [Anonymous], 1977, MYCOTAXON
  • [6] [Anonymous], 2014, THE MYCOTA A
  • [7] [Anonymous], 2013, Current Research in Environmental & Applied Mycology
  • [8] Epitypification and neotypification: guidelines with appropriate and inappropriate examples
    Ariyawansa, Hiran A.
    Hawksworth, David L.
    Hyde, Kevin D.
    Jones, E. B. Gareth
    Maharachchikumbura, Sajeewa S. N.
    Manamgoda, Dimuthu S.
    Thambugala, Kasun M.
    Udayanga, Dhanushka
    Camporesi, Erio
    Daranagama, Anupama
    Jayawardena, Ruvishika
    Liu, Jian-Kui
    McKenzie, Eric H. C.
    Phookamsak, Rungtiwa
    Senanayake, Indunil C.
    Shivas, Roger G.
    Tian, Qing
    Xu, Jian-Chu
    [J]. FUNGAL DIVERSITY, 2014, 69 (01) : 57 - 91
  • [9] Arvanitoyannis IS, 2008, FOOD SCI TECH-INT SE, P413, DOI 10.1016/B978-012373654-3.50010-9
  • [10] Avise J.C., 1990, Oxford Surveys in Evolutionary Biology, V7, P45