共 2 条
Transcriptome Characterization for Non-Model Endangered Lycaenids, Protantigius superans and Spindasis takanosis, Using Illumina HiSeq 2500 Sequencing
被引:14
|作者:
Patnaik, Bharat Bhusan
[1
,2
]
Hwang, Hee-Ju
[1
]
Kang, Se Won
[1
]
Park, So Young
[1
]
Wang, Tae Hun
[1
]
Park, Eun Bi
[1
]
Chung, Jong Min
[1
]
Song, Dae Kwon
[1
]
Kim, Changmu
[3
]
Kim, Soonok
[3
]
Lee, Jae Bong
[4
]
Jeong, Heon Cheon
[5
]
Park, Hong Seog
[6
]
Han, Yeon Soo
[7
]
Lee, Yong Seok
[1
]
机构:
[1] Soonchunhyang Univ, Coll Nat Sci, Dept Life Sci & Biotechnol, Asan 31538, Chungcheongnam, South Korea
[2] Trident Acad Creat Technol, Trident Sch Biotech Sci, Bhubaneswar 751024, Odisha, India
[3] Natl Inst Biol Resources, Inchon 22689, South Korea
[4] Chonbuk Natl Univ, Korea Zoonosis Res Inst KOZRI, Iksan 54528, Jeollabuk Do, South Korea
[5] Hampyeong Cty Agr Technol Ctr, Hampyeong Cty Insect Inst, Hampyeong Gun 57158, Jeollanan Do, South Korea
[6] GnC BIO Co LTD, Res Inst, Daejeon 34069, South Korea
[7] Chonnam Natl Univ, Coll Agr & Life Sci, Gwangju 61186, South Korea
来源:
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
|
2015年
/
16卷
/
12期
关键词:
Protantigius superans;
Spindasis takanosis;
endangered species;
transcriptome;
Illumina sequencing;
BLAST2GO;
SSRs (simple sequence repeats);
MITOCHONDRIAL GENOME;
MICROSATELLITE LOCI;
CONSERVATION;
LEPIDOPTERA;
PROTEINS;
ECOLOGY;
MARKERS;
GENES;
DNA;
D O I:
10.3390/ijms161226213
中图分类号:
Q5 [生物化学];
Q7 [分子生物学];
学科分类号:
071010 ;
081704 ;
摘要:
The Lycaenidae butterflies, Protantigius superans and Spindasis takanosis, are endangered insects in Korea known for their symbiotic association with ants. However, necessary genomic and transcriptomics data are lacking in these species, limiting conservation efforts. In this study, the P. superans and S. takanosis transcriptomes were deciphered using Illumina HiSeq 2500 sequencing. The P. superans and S. takanosis transcriptome data included a total of 254,340,693 and 245,110,582 clean reads assembled into 159,074 and 170,449 contigs and 107,950 and 121,140 unigenes, respectively. BLASTX hits (E-value of 1.0 x 10(-5)) against the known protein databases annotated a total of 46,754 and 51,908 transcripts for P. superans and S. takanosis. Approximately 41.25% and 38.68% of the unigenes for P. superans and S. takanosis found homologous sequences in Protostome DB (PANM-DB). BLAST2GO analysis confirmed 18,611 unigenes representing Gene Ontology (GO) terms and a total of 5259 unigenes assigned to 116 pathways for P. superans. For S. takanosis, a total of 6697 unigenes were assigned to 119 pathways using the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway database. Additionally, 382,164 and 390,516 Simple Sequence Repeats (SSRs) were compiled from the unigenes of P. superans and S. takanosis, respectively. This is the first report to record new genes and their utilization for conservation of lycaenid species population and as a reference information for closely related species.
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页码:29948 / 29970
页数:23
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