Draft genome sequence of Cercospora canescens: a leaf spot causing pathogen

被引:1
作者
Chand, Ramesh [1 ]
Pal, Chhattar [1 ]
Singh, Vineeta [1 ]
Kumar, Manoj [1 ,2 ]
Singh, Vinay Kumar [3 ]
Chowdappa, Pallem [4 ]
机构
[1] Banaras Hindu Univ, Inst Agr Sci, Dept Mycol & Plant Pathol, Varanasi 221005, Uttar Pradesh, India
[2] Banaras Hindu Univ, Fac Sci, Dept Biochem, Varanasi 221005, Uttar Pradesh, India
[3] Banaras Hindu Univ, Sch Biotechnol, Ctr Bioinformat, Varanasi 221005, Uttar Pradesh, India
[4] ICAR Cent Plantat Crops Res Inst, Kudlu 671124, India
来源
CURRENT SCIENCE | 2015年 / 109卷 / 11期
关键词
Cercospora canescens; functional annotation; gene prediction; sequencing and assembly; Vigna radiata; MAGNAPORTHE-GRISEA; ZEAE-MAYDIS; SSR-MARKERS; MAP KINASE; GENE; PLANT; GROWTH; BLAST; GENERATION; RESISTANT;
D O I
暂无
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Cercospora canescens (Ellis and Martin) is a hemibiotrophic pathogen causing leaf spot disease on mungbean (Vigna radiata L). Genome sequence (similar to 33.97 Mb) assembled in 8239 contigs with 10627 protein coding genes. A total of 2842 proteins were identified as homologous of 223 predicted and 7562 putative un-characterized involved in biological processes, molecular functions. The identified proteins are mainly involved in infection process used to compromise nutrients or destroy host tissues, the gycosidases, transposases and cytochrome P450s genes codes to signal transduction, cell wall breakdown, transporters, host stomata perception, adhesion, polyketide synthase and cercosporin. A total of 528 simple sequence repeats were also identified from the genome sequence assembly of C. canescens. This study provides insights into pathogenic mechanism and a better understanding of virulence differentiation of C. canescens. It will also help in identification of similarity and differences in regions among the genomes of different species of Cercospora.
引用
收藏
页码:2103 / 2110
页数:8
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