Relaxation of Voronoi shells in hydrated molecular ionic liquids

被引:33
作者
Neumayr, G. [1 ]
Schroeder, C. [1 ]
Steinhauser, O. [1 ]
机构
[1] Univ Vienna, Dept Computat Biol Chem, A-1090 Vienna, Austria
基金
奥地利科学基金会;
关键词
computational geometry; liquid mixtures; liquid structure; liquid theory; Markov processes; molecular dynamics method; organic compounds; probability; solvation; viscosity; water; PARTICLE MESH EWALD; DELAUNAY TESSELLATION; DIELECTRIC-PROPERTIES; LARGE DIPOLES; FORCE-FIELD; DYNAMICS; PROTEIN; WATER; SOLVATION; EQUATIONS;
D O I
10.1063/1.3256003
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The relaxation of solvation shells is studied following a twofold strategy based on a direct analysis of simulated data as well as on a solution of a Markovian master equation. In both cases solvation shells are constructed by Voronoi decomposition or equivalent Delaunay tessellation. The theoretical framework is applied to two types of hydrated molecular ionic liquids, 1-butyl-3-methyl-imidazolium tetrafluoroborate and 1-ethyl-3-methyl-imidazolium trifluoromethylsulfonate, both mixed with water. Molecular dynamics simulations of both systems were performed at various mole fractions of water. A linear relationship between the mean residence time and the system's viscosity is found from the direct analysis independent of the system's type. The complex time behavior of shell relaxation can be modeled by a Kohlrausch-Williams-Watts function with an almost universal stretching parameter of 1/2 indicative of a square root time law. The probabilistic model enables an intuitive interpretation of essential motional parameters otherwise not accessible by direct analysis. Even more, incorporating the square root time law into the probabilistic model enables a quantitative prediction of shell relaxation from very short simulation studies. In particular, the viscosity of the respective systems can be predicted.
引用
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页数:14
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共 45 条
  • [1] Abseher R, 1996, PROTEINS, V25, P366, DOI 10.1002/(SICI)1097-0134(199607)25:3<366::AID-PROT8>3.0.CO
  • [2] 2-D
  • [3] Anderssen RS., 2004, ANZIAM, V45, P800, DOI DOI 10.21914/ANZIAMJ.V45I0.924
  • [4] [Anonymous], 2000, Spatial tessellations: concepts and applications of Voronoi diagrams
  • [5] ON CALCULATION OF AUTOCORRELATION FUNCTIONS OF DYNAMICAL VARIABLES
    BERNE, BJ
    BOON, JP
    RICE, SA
    [J]. JOURNAL OF CHEMICAL PHYSICS, 1966, 45 (04) : 1086 - &
  • [6] Towards a better description and understanding of biomolecular solvation
    Boresch, S
    Ringhofer, S
    Höchtl, P
    Steinhauser, O
    [J]. BIOPHYSICAL CHEMISTRY, 1999, 78 (1-2) : 43 - 68
  • [7] Studying the dielectric properties of a protein solution by computer simulation
    Boresch, S
    Höchtl, P
    Steinhauser, O
    [J]. JOURNAL OF PHYSICAL CHEMISTRY B, 2000, 104 (36): : 8743 - 8752
  • [8] Fast Delaunay triangulation in three dimensions
    Borouchaki, H
    Lo, SH
    [J]. COMPUTER METHODS IN APPLIED MECHANICS AND ENGINEERING, 1995, 128 (1-2) : 153 - 167
  • [9] Delaunay mesh generation governed by metric specifications .1. Algorithms
    Borouchaki, H
    George, PL
    Hecht, F
    Laug, P
    Saltel, E
    [J]. FINITE ELEMENTS IN ANALYSIS AND DESIGN, 1997, 25 (1-2) : 61 - 83
  • [10] Shelling the Voronoi interface of protein-protein complexes reveals patterns of residue conservation, dynamics, and composition
    Bouvier, Benjamin
    Gruenberg, Raik
    Nilges, Michael
    Cazals, Frederic
    [J]. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2009, 76 (03) : 677 - 692