Genomic attributes of extended-spectrum β-lactamase-producing Escherichia coli isolated from patients in Lebanon

被引：9
|
作者：
Tokajian, Sima [1 ]
Salloum, Tamara [1 ]
Eisen, Jonathan A. [2 ]
Jospin, Guillaume [2 ]
Farra, Anna [3 ]
Mokhbat, Jacques E. [3 ]
Coil, David A. [2 ]
机构：
[1] Lebanese Amer Univ, Sch Arts & Sci, Dept Nat Sci, Byblos, Lebanon
[2] Univ Calif Davis, Genome Ctr, Dept Evolut & Ecol, Davis, CA 95616 USA
[3] Lebanese Amer Univ, Sch Med, Byblos, Lebanon
来源：
FUTURE MICROBIOLOGY | 2017年 / 12卷 / 03期
关键词：
ESBL; Escherichia coli; Genomic epidemiology; Lebanon; KLEBSIELLA-PNEUMONIAE; FECAL SAMPLES; RNA GENES; RESISTANCE; SEQUENCE; BACTERIAL; EVOLUTION; TOOL; BACTERIOPHAGES; IDENTIFICATION;
D O I：
10.2217/fmb-2017-0171
中图分类号：
Q93 [微生物学];
学科分类号：
071005 ; 100705 ;
摘要：
Aim: Extended-spectrum beta-lactamase-producing (ESBL) Escherichia coli are a public threat worldwide. This study aimed at analyzing the genomic and functional attributes of nine ESBLs taken from rectal swabs. Materials & methods: Samples were isolated from patients admitted for gastrointestinal and urological procedures at the University Medical Center-Rizk Hospital (UMCRH) in Lebanon. Illumina paired-end libraries were prepared and sequenced. Results: The isolates were distributed into five lineages: ST131, ST648, ST405, ST73 and ST38, and harbored bla(OXA-1), bla(TEM-1B), bla(TEM-1C) and aac(6') Ib-cr. ST131 isolates were carriers of stx2 converting I phage. Conclusion: This is the first comprehensive genomic analysis performed on ESBLs in Lebanon.
引用
收藏
页码：213 / 226
页数：14
相关论文
共 50 条
  • [1] Extended-spectrum β-lactamase-producing Escherichia coli in wastewaters and refugee camp in Lebanon
    Tokajian, Sima
    Moghnieh, Rima
    Salloum, Tamara
    Arabaghian, Harout
    Alousi, Sahar
    Moussa, Jennifer
    Abboud, Edmond
    Youssef, Souad
    Husni, Rola
    FUTURE MICROBIOLOGY, 2018, 13 (01) : 81 - 95
  • [2] Extended-Spectrum β-Lactamase-Producing Escherichia coli Isolated from Food-Producing Animals in Tamaulipas, Mexico
    Mandujano, Antonio
    Veronica Cortes-Espinosa, Diana
    Vasquez-Villanueva, Jose
    Guel, Paulina
    Rivera, Gildardo
    Juarez-Rendon, Karina
    Lizeth Cruz-Pulido, Wendy
    Aguilera-Arreola, Guadalupe
    Guerrero, Abraham
    Bocanegra-Garcia, Virgilio
    Veronica Martinez-Vazquez, Ana
    ANTIBIOTICS-BASEL, 2023, 12 (06):
  • [3] Extended-spectrum β-lactamase-producing Escherichia coli from poultry: A review
    Widodo, Agus
    Khairullah, Aswin Rafif
    Effendi, Mustofa Helmi
    Moses, Ikechukwu Benjamin
    Agustin, Alfiana Laili Dwi
    VETERINARY WORLD, 2024, 17 (09) : 2017 - 2027
  • [4] Factors for Occurrence of Extended-Spectrum β-Lactamase-Producing Escherichia coli in Broilers
    Hiroi, Midori
    Matsui, Shigeyuki
    Kubo, Ryoichi
    Iida, Natsuko
    Noda, Yoshihiro
    Kanda, Takashi
    Sugiyama, Kanji
    Hara-Kudo, Yukiko
    Ohashi, Norio
    JOURNAL OF VETERINARY MEDICAL SCIENCE, 2012, 74 (12): : 1635 - 1637
  • [5] RISK FACTORS FOR EXTENDED-SPECTRUM β-LACTAMASE-PRODUCING ESCHERICHIA COLI INFECTION IN HOSPITALIZED PATIENTS
    Ikeda, Yoshiaki
    Mamiya, Takayoshi
    Nishiyama, Hideki
    Koseki, Takenao
    Mouri, Akihiro
    Nabeshima, Toshitaka
    NAGOYA JOURNAL OF MEDICAL SCIENCE, 2012, 74 (1-2): : 105 - 114
  • [6] Characterization of Extended-Spectrum β-Lactamase-Producing Escherichia coli in Animal Farms in Hunan Province, China
    Xiao, Ning
    Li, Yujuan
    Lin, Hongguang
    Yang, Jie
    Xiao, Gang
    Jiang, Zonghan
    Zhang, Yunqiang
    Chen, Wenxin
    Zhou, Pengcheng
    Sun, Zhiliang
    Li, Jiyun
    MICROORGANISMS, 2024, 12 (04)
  • [7] Molecular detection of extended-spectrum β-lactamase-producing Escherichia coli from bat caves on Lombok Island
    Mustika, Yolla Rona
    Kinasih, Kurnia Nisa
    Effendi, Mustofa Helmi
    Puspitasari, Yulianna
    Kurniawan, Shendy Canadya
    Khairullah, Aswin Rafif
    Samodra, Muhammad Esa Erlang
    Hasib, Abdullah
    Agustin, Alfiana Laili Dwi
    Moses, Ikechukwu Benjamin
    Silaen, Otto Sahat Martua
    OPEN VETERINARY JOURNAL, 2024, 14 (02) : 699 - 706
  • [8] Detection and characterization of extended-spectrum β-lactamase-producing Escherichia coli from chicken production chains in Nigeria
    Ojo, Olufemi E.
    Schwarz, Stefan
    Michael, Geovana B.
    VETERINARY MICROBIOLOGY, 2016, 194 : 62 - 68
  • [9] Extended-spectrum β-lactamase-producing Escherichia coli isolated from raw vegetables in South Korea
    Song, Jihyun
    Oh, Sung-Suck
    Kim, Junghee
    Shin, Jinwook
    SCIENTIFIC REPORTS, 2020, 10 (01)
  • [10] Characterization of Extended-Spectrum β-Lactamase-Producing Uropathogenic Escherichia coli Among Iranian Kidney Transplant Patients
    Halaji, Mehrdad
    Shahidi, Shahrzad
    Atapour, Abdolamir
    Ataei, Behrooz
    Feizi, Awat
    Havaei, Seyed Asghar
    INFECTION AND DRUG RESISTANCE, 2020, 13 : 1429 - 1437
12345