Dynamical features of the Plasmodium falciparum ribosome during translation

被引:37
作者
Sun, Ming [1 ]
Li, Wen [2 ]
Blomqvist, Karin [3 ,4 ,5 ]
Das, Sanchaita [6 ]
Hashem, Yaser [7 ]
Dvorin, Jeffrey D. [3 ,4 ]
Frank, Joachim [1 ,2 ,8 ]
机构
[1] Columbia Univ, Dept Biol Sci, New York, NY 10027 USA
[2] Columbia Univ, Dept Biochem & Mol Biophys, New York, NY 10032 USA
[3] Boston Childrens Hosp, Div Infect Dis, Boston, MA 02115 USA
[4] Harvard Univ, Sch Med, Dept Pediat, Boston, MA 02115 USA
[5] Karolinska Inst, Dept Microbiol Tumor & Cell Biol, S-17177 Stockholm, Sweden
[6] Univ Massachusetts, Sch Med, Program Mol Med, Worcester, MA 01605 USA
[7] Univ Strasbourg, CNRS, Architecture & React ARN, F-67084 Strasbourg, France
[8] Columbia Univ, Howard Hughes Med Inst, New York, NY 10032 USA
基金
瑞典研究理事会; 美国国家卫生研究院;
关键词
EUKARYOTIC 80S RIBOSOME; HUMAN MALARIA PARASITES; PROTEIN-KINASE-C; CRYOELECTRON MICROSCOPY; ELECTRON-MICROSCOPY; MOLECULAR-DYNAMICS; ANGSTROM RESOLUTION; RACK1; PROTEIN; CRYO-EM; SYSTEM;
D O I
10.1093/nar/gkv991
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Plasmodium falciparum, the mosquito-transmitted Apicomplexan parasite, causes the most severe form of human malaria. In the asexual blood-stage, the parasite resides within erythrocytes where it proliferates, multiplies and finally spreads to new erythrocytes. Development of drugs targeting the ribosome, the site of protein synthesis, requires specific knowledge of its structure and work cycle, and, critically, the ways they differ from those in the human host. Here, we present five cryo-electron microscopy (cryo-EM) reconstructions of ribosomes purified from P. falciparum blood-stage schizonts at sub-nanometer resolution. Atomic models were built from these density maps by flexible fitting. Significantly, our study has taken advantage of new capabilities of cryo-EM, in visualizing several structures co-existing in the sample at once, at a resolution sufficient for building atomic models. We have discovered structural and dynamic features that differentiate the ribosomes of P. falciparum from those of mammalian system. Prompted by the absence of RACK1 on the ribosome in our and an earlier study we confirmed that RACK1 does not specifically co-purify with the 80S fraction in schizonts. More extensive studies, using cryo-EM methodology, of translation in the parasite will provide structural knowledge that may lead to development of novel anti-malarials.
引用
收藏
页码:10515 / 10524
页数:10
相关论文
共 46 条
  • [41] Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics
    Trabuco, Leonardo G.
    Villa, Elizabeth
    Mitra, Kakoli
    Frank, Joachim
    Schulten, Klaus
    [J]. STRUCTURE, 2008, 16 (05) : 673 - 683
  • [42] Trager W, 2005, J PARASITOL, V91, P484, DOI 10.1645/0022-3395(2005)091[0484:HMPICC]2.0.CO
  • [43] 2
  • [44] Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine
    Wong, Wilson
    Bai, Xiao-chen
    Brown, Alan
    Fernandez, Israel S.
    Hanssen, Eric
    Condron, Melanie
    Tan, Yan Hong
    Baum, Jake
    Scheres, Sjors H. W.
    [J]. ELIFE, 2014, 3
  • [45] High-Resolution Structure of the Eukaryotic 80S Ribosome
    Yusupova, Gulnara
    Yusupov, Marat
    [J]. ANNUAL REVIEW OF BIOCHEMISTRY, VOL 83, 2014, 83 : 467 - 486
  • [46] Automated and fast building of three-dimensional RNA structures
    Zhao, Yunjie
    Huang, Yangyu
    Gong, Zhou
    Wang, Yanjie
    Man, Jianfen
    Xiao, Yi
    [J]. SCIENTIFIC REPORTS, 2012, 2