Dynamical features of the Plasmodium falciparum ribosome during translation

被引:37
作者
Sun, Ming [1 ]
Li, Wen [2 ]
Blomqvist, Karin [3 ,4 ,5 ]
Das, Sanchaita [6 ]
Hashem, Yaser [7 ]
Dvorin, Jeffrey D. [3 ,4 ]
Frank, Joachim [1 ,2 ,8 ]
机构
[1] Columbia Univ, Dept Biol Sci, New York, NY 10027 USA
[2] Columbia Univ, Dept Biochem & Mol Biophys, New York, NY 10032 USA
[3] Boston Childrens Hosp, Div Infect Dis, Boston, MA 02115 USA
[4] Harvard Univ, Sch Med, Dept Pediat, Boston, MA 02115 USA
[5] Karolinska Inst, Dept Microbiol Tumor & Cell Biol, S-17177 Stockholm, Sweden
[6] Univ Massachusetts, Sch Med, Program Mol Med, Worcester, MA 01605 USA
[7] Univ Strasbourg, CNRS, Architecture & React ARN, F-67084 Strasbourg, France
[8] Columbia Univ, Howard Hughes Med Inst, New York, NY 10032 USA
基金
瑞典研究理事会; 美国国家卫生研究院;
关键词
EUKARYOTIC 80S RIBOSOME; HUMAN MALARIA PARASITES; PROTEIN-KINASE-C; CRYOELECTRON MICROSCOPY; ELECTRON-MICROSCOPY; MOLECULAR-DYNAMICS; ANGSTROM RESOLUTION; RACK1; PROTEIN; CRYO-EM; SYSTEM;
D O I
10.1093/nar/gkv991
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Plasmodium falciparum, the mosquito-transmitted Apicomplexan parasite, causes the most severe form of human malaria. In the asexual blood-stage, the parasite resides within erythrocytes where it proliferates, multiplies and finally spreads to new erythrocytes. Development of drugs targeting the ribosome, the site of protein synthesis, requires specific knowledge of its structure and work cycle, and, critically, the ways they differ from those in the human host. Here, we present five cryo-electron microscopy (cryo-EM) reconstructions of ribosomes purified from P. falciparum blood-stage schizonts at sub-nanometer resolution. Atomic models were built from these density maps by flexible fitting. Significantly, our study has taken advantage of new capabilities of cryo-EM, in visualizing several structures co-existing in the sample at once, at a resolution sufficient for building atomic models. We have discovered structural and dynamic features that differentiate the ribosomes of P. falciparum from those of mammalian system. Prompted by the absence of RACK1 on the ribosome in our and an earlier study we confirmed that RACK1 does not specifically co-purify with the 80S fraction in schizonts. More extensive studies, using cryo-EM methodology, of translation in the parasite will provide structural knowledge that may lead to development of novel anti-malarials.
引用
收藏
页码:10515 / 10524
页数:10
相关论文
共 46 条
  • [1] RACK1, A multifaceted scaffolding protein: Structure and function
    Adams, David R.
    Ron, Dorit
    Kiely, Patrick A.
    [J]. CELL COMMUNICATION AND SIGNALING, 2011, 9
  • [2] Structures of the human and Drosophila 80S ribosome
    Anger, Andreas M.
    Armache, Jean-Paul
    Berninghausen, Otto
    Habeck, Michael
    Subklewe, Marion
    Wilson, Daniel N.
    Beckmann, Roland
    [J]. NATURE, 2013, 497 (7447) : 80 - +
  • [3] Ribosome structures to near-atomic resolution from thirty thousand cryo-EM particles
    Bai, Xiao-chen
    Fernandez, Israel S.
    McMullan, Greg
    Scheres, Sjors H. W.
    [J]. ELIFE, 2013, 2
  • [4] Structural Snapshots of Actively Translating Human Ribosomes
    Behrmann, Elmar
    Loerke, Justus
    Budkevich, Tatyana V.
    Yamamoto, Kaori
    Schmidt, Andrea
    Penczek, Pawel A.
    Vos, Matthijn R.
    Buerger, Joerg
    Mielke, Thorsten
    Scheerer, Patrick
    Spahn, Christian M. T.
    [J]. CELL, 2015, 161 (04) : 845 - 857
  • [5] The Structure of the Eukaryotic Ribosome at 3.0 Å Resolution
    Ben-Shem, Adam
    de Loubresse, Nicolas Garreau
    Melnikov, Sergey
    Jenner, Lasse
    Yusupova, Gulnara
    Yusupov, Marat
    [J]. SCIENCE, 2011, 334 (6062) : 1524 - 1529
  • [6] Structure and Dynamics of the Mammalian Ribosomal Pretranslocation Complex
    Budkevich, Tatyana
    Giesebrecht, Jan
    Altman, Roger B.
    Munro, James B.
    Mielke, Thorsten
    Nierhaus, Knud H.
    Blanchard, Scott C.
    Spahn, Christian M. T.
    [J]. MOLECULAR CELL, 2011, 44 (02) : 214 - 224
  • [7] Regulation of the Mammalian Elongation Cycle by Subunit Rolling: A Eukaryotic-Specific Ribosome Rearrangement
    Budkevich, Tatyana V.
    Giesebrecht, Jan
    Behrmann, Elmar
    Loerke, Justus
    Ramrath, David J. F.
    Mielke, Thorsten
    Ismer, Jochen
    Hildebrand, Peter W.
    Tung, Chang-Shung
    Nierhaus, Knud H.
    Sanbonmatsu, Karissa Y.
    Spahn, Christian M. T.
    [J]. CELL, 2014, 158 (01) : 121 - 131
  • [8] Polysome profiling reveals translational control of gene expression in the human malaria parasite Plasmodium falciparum
    Bunnik, Evelien M.
    Chung, Duk-Won Doug
    Hamilton, Michael
    Ponts, Nadia
    Saraf, Anita
    Prudhomme, Jacques
    Florens, Laurence
    Le Roch, Karine G.
    [J]. GENOME BIOLOGY, 2013, 14 (11):
  • [9] Structure of the mammalian 80S ribosome at 8.7 Å resolution
    Chandramouli, Preethi
    Topf, Maya
    Menetret, Jean-Francois
    Eswar, Narayanan
    Cannone, Jamie J.
    Gutell, Robin R.
    Sali, Andrej
    Akey, Christopher W.
    [J]. STRUCTURE, 2008, 16 (04) : 535 - 548
  • [10] High-resolution noise substitution to measure overfitting and validate resolution in 3D structure determination by single particle electron cryomicroscopy
    Chen, Shaoxia
    McMullan, Greg
    Faruqi, Abdul R.
    Murshudov, Garib N.
    Short, Judith M.
    Scheres, Sjors H. W.
    Henderson, Richard
    [J]. ULTRAMICROSCOPY, 2013, 135 : 24 - 35