Technique for Energy Decomposition in the Study of "Receptor-Ligand" Complexes

被引:51
|
作者
Potemkin, Vladimir A. [1 ]
Pogrebnoy, Alexander A. [1 ]
Grishina, Maria A. [1 ]
机构
[1] Chelyabinsk State Med Acad, Chelyabinsk 454048, Russia
关键词
HUMAN LIVER-MICROSOMES; IN-VITRO METABOLISM; EXPRESSED HUMAN CYTOCHROME-P450; PROTEIN DATA-BANK; STRUCTURAL BASIS; DIHYDROFOLATE-REDUCTASE; OXIDATIVE-METABOLISM; GAUSSIAN DESCRIPTION; MOLECULAR DOCKING; GENETIC ALGORITHM;
D O I
10.1021/ci800405n
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
A new methodology to describe the interactions in "receptor-ligand" complexes is presented. The methodology is based on a combination of the 3D/4D QSAR BiS/MC and CoCon algorithms. The first algorithm performs the restricted docking of compounds to receptor pockets. The second determines the relationships between the bioactivity and the parameters of interactions in the "receptor-ligand" complexes, including a new formalism for estimating hydrogen bond energies.
引用
收藏
页码:1389 / 1406
页数:18
相关论文
共 50 条
  • [41] CINF 50-A procedure for modeling induced fit effects in receptor-ligand complexes
    Raubacher, Florian
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2006, 232
  • [42] Influencing receptor-ligand binding mechanisms with multivalent ligand architecture
    Gestwicki, JE
    Cairo, CW
    Strong, LE
    Oetjen, KA
    Kiessling, LL
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2002, 124 (50) : 14922 - 14933
  • [43] Structural Analysis of Chemokine Receptor-Ligand Interactions
    Arimont, Marta
    Sun, Shan-Liang
    Leurs, Rob
    Smit, Martine
    de Esch, Iwan J. P.
    de Graaf, Chris
    JOURNAL OF MEDICINAL CHEMISTRY, 2017, 60 (12) : 4735 - 4779
  • [44] Characterization of bacterial surface receptor-ligand interactions
    Holland, J
    Gorringe, A
    METHODS IN MICROBIOLOGY, VOL 27, 1998, 27 : 215 - 225
  • [45] OX40 RECEPTOR-LIGAND INTERACTION
    GODFREY, W
    HARARA, M
    BUCK, D
    ENGLEMAN, E
    JOURNAL OF CELLULAR BIOCHEMISTRY, 1995, : 70 - 70
  • [46] Construction of a model receptor-ligand system.
    Saltmarsh, J
    Sun, S
    Mallik, S
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 1998, 215 : U24 - U24
  • [47] Receptor-ligand binding sites and virtual screening
    Hattotuwagama, CK
    Davies, MN
    Flower, DR
    CURRENT MEDICINAL CHEMISTRY, 2006, 13 (11) : 1283 - 1304
  • [48] SOMAN AND RECEPTOR-LIGAND INTERACTION IN ELECTROPHORUS ELECTROPLAQUES
    BULLOCK, JO
    FARQUHARSON, DA
    HOSKIN, FCG
    BIOCHEMICAL PHARMACOLOGY, 1977, 26 (04) : 337 - 343
  • [49] Receptor-ligand binding assays: Technologies and applications
    de Jong, LAA
    Uges, DRA
    Franke, JP
    Bischoff, R
    JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES, 2005, 829 (1-2): : 1 - 25
  • [50] Reliability theory for receptor-ligand bond dissociation
    Tees, DFJ
    Woodward, JT
    Hammer, DA
    JOURNAL OF CHEMICAL PHYSICS, 2001, 114 (17): : 7483 - 7496