Accurate scoring of non-uniform sampling schemes for quantitative NMR

被引:41
作者
Aoto, Phillip C.
Fenwick, R. Bryn
Kroon, Gerard J. A.
Wright, Peter E. [1 ]
机构
[1] Scripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
基金
美国国家卫生研究院;
关键词
Non-uniform sampling; NMR; Quantitative NUS; NUS scoring function; Optimal NUS; Poisson-gap sampling; SPECTROSCOPY; RESOLUTION; RECONSTRUCTION; SENSITIVITY;
D O I
10.1016/j.jmr.2014.06.020
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Non-uniform sampling (NUS) in NMR spectroscopy is a recognized and powerful tool to minimize acquisition time. Recent advances in reconstruction methodologies are paving the way for the use of NUS in quantitative applications, where accurate measurement of peak intensities is crucial. The presence or absence of NUS artifacts in reconstructed spectra ultimately determines the success of NUS in quantitative NMR. The quality of reconstructed spectra from NUS acquired data is dependent upon the quality of the sampling scheme. Here we demonstrate that the best performing sampling schemes make up a very small percentage of the total randomly generated schemes. A scoring method is found to accurately predict the quantitative similarity between reconstructed NUS spectra and those of fully sampled spectra. We present an easy-to-use protocol to batch generate and rank optimal Poisson-gap NUS schedules for use with 2D NMR with minimized noise and accurate signal reproduction, without the need for the creation of synthetic spectra. (C) 2014 Elsevier Inc. All rights reserved.
引用
收藏
页码:31 / 35
页数:5
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