Natural language processing with deep learning for medical adverse event detection from free-text medical narratives: A case study of detecting total hip replacement dislocation

被引:36
作者
Borjali, Alireza [1 ,2 ]
Magneli, Martin [1 ,2 ,3 ]
Shin, David [1 ]
Malchau, Henrik [1 ,4 ]
Muratoglu, Orhun K. [1 ,2 ]
Varadarajan, Kartik M. [1 ,2 ]
机构
[1] Massachusetts Gen Hosp, Harris Orthopaed Lab, Dept Orthopaed Surg, 55 Fruit St,GRJ 12-1223, Boston, MA 02114 USA
[2] Harvard Med Sch, Dept Orthopaed Surg, Boston, MA 02115 USA
[3] Karolinska Inst, Danderyd Hosp, Dept Clin Sci, Stockholm, Sweden
[4] Sahlgrens Univ Hosp, Dept Orthopaed Surg, Gothenburg, Sweden
关键词
Medical adverse event; Natural language processing; Deep learning; Hip dislocation; Electronic medical records; DRUG EVENTS; CLASSIFICATION; REGRESSION;
D O I
10.1016/j.compbiomed.2020.104140
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Background: Accurate and timely detection of medical adverse events (AEs) from free-text medical narratives can be challenging. Natural language processing (NLP) with deep learning has already shown great potential for analyzing free-text data, but its application for medical AE detection has been limited. Method: In this study, we developed deep learning based NLP (DL-NLP) models for efficient and accurate hip dislocation AE detection following primary total hip replacement from standard (radiology notes) and nonstandard (follow-up telephone notes) free-text medical narratives. We benchmarked these proposed models with traditional machine learning based NLP (ML-NLP) models, and also assessed the accuracy of International Classification of Diseases (ICD) and Current Procedural Terminology (CPT) codes in capturing these hip dislocation AEs in a multi-center orthopaedic registry. Results: All DL-NLP models outperformed all of the ML-NLP models, with a convolutional neural network (CNN) model achieving the best overall performance (Kappa = 0.97 for radiology notes, and Kappa = 1.00 for follow-up telephone notes). On the other hand, the ICD/CPT codes of the patients who sustained a hip dislocation AE were only 75.24% accurate. Conclusions: We demonstrated that a DL-NLP model can be used in largescale orthopaedic registries for accurate and efficient detection of hip dislocation AEs. The NLP model in this study was developed with data from the most frequently used electronic medical record (EMR) system in the U.S., Epic. This NLP model could potentially be implemented in other Epic-based EMR systems to improve AE detection, and consequently, quality of care and patient outcomes.
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页数:8
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