Overview of Genomic Tools for Circular Visualization in the Next-generation Genomic Sequencing Era

被引:4
|
作者
Parveen, Alisha [1 ]
Khurana, Sukant [2 ]
Kumar, Abhishek [3 ]
机构
[1] Heidelberg Univ, Med Fac Mannheim, Med Res Ctr, Mannheim, Germany
[2] Cent Drug Res Inst Lucknow, Pharmacol Dept, Lucknow, Uttar Pradesh, India
[3] Christian Albrechts Univ Kiel, Dept Genet & Mol Biol Bot, Inst Bot, Kiel, Germany
关键词
Circular visualization; Circos; Genomics; Next-generation sequencing; Data modeling; BLAST alignment; R PACKAGE; CIRCOS;
D O I
10.2174/1389202920666190314092044
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
After human genome sequencing and rapid changes in genome sequencing methods, we have entered into the era of rapidly accumulating genome-sequencing data. This has derived the development of several types of methods for representing results of genome sequencing data. Circular genome visualization tools are also critical in this area as they provide rapid interpretation and simple visualization of overall data. In the last 15 years, we have seen rapid changes in circular visualization tools after the development of the circos tool with 1-2 tools published per year. Herein we have summarized and revisited all these tools until the third quarter of 2018.
引用
收藏
页码:90 / 99
页数:10
相关论文
共 50 条
  • [1] A comparison of tools for the simulation of genomic next-generation sequencing data
    Merly Escalona
    Sara Rocha
    David Posada
    Nature Reviews Genetics, 2016, 17 : 459 - 469
  • [2] A comparison of tools for the simulation of genomic next-generation sequencing data
    Escalona, Merly
    Rocha, Sara
    Posada, David
    NATURE REVIEWS GENETICS, 2016, 17 (08) : 459 - 469
  • [3] Defining the Clinical Value of a Genomic Diagnosis in the Era of Next-Generation Sequencing
    Strande, Natasha T.
    Berg, Jonathan S.
    ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS, VOL 17, 2016, 17 : 303 - 332
  • [4] Genomic variation in Arabidopsis: tools and insights from next-generation sequencing
    Hollister, Jesse D.
    CHROMOSOME RESEARCH, 2014, 22 (02) : 103 - 115
  • [5] Genomic variation in Arabidopsis: tools and insights from next-generation sequencing
    Jesse D. Hollister
    Chromosome Research, 2014, 22 : 103 - 115
  • [6] Author Correction: A comparison of tools for the simulation of genomic next-generation sequencing data
    Merly Escalona
    Sara Rocha
    David Posada
    Nature Reviews Genetics, 2018, 19 : 733 - 733
  • [7] Next generation tools for genomic data generation, distribution, and visualization
    Nix, David A.
    Di Sera, Tonya L.
    Dalley, Brian K.
    Milash, Brett A.
    Cundick, Robert M.
    Quinn, Kevin S.
    Courdy, Samir J.
    BMC BIOINFORMATICS, 2010, 11
  • [8] Next generation tools for genomic data generation, distribution, and visualization
    David A Nix
    Tonya L Di Sera
    Brian K Dalley
    Brett A Milash
    Robert M Cundick
    Kevin S Quinn
    Samir J Courdy
    BMC Bioinformatics, 11
  • [9] Exploiting the potential of next-generation sequencing in genomic medicine
    Pinto, Anna Maria
    Ariani, Francesca
    Bianciardi, Laura
    Daga, Sergio
    Renieri, Alessandra
    EXPERT REVIEW OF MOLECULAR DIAGNOSTICS, 2016, 16 (09) : 1037 - 1047
  • [10] Developing molecular tools and insights into the Penstemon genome using genomic reduction and next-generation sequencing
    Dockter, Rhyan B.
    Elzinga, David B.
    Geary, Brad
    Maughan, P. Jeff
    Johnson, Leigh A.
    Tumbleson, Danika
    Franke, JanaLynn
    Dockter, Keri
    Stevens, Mikel R.
    BMC GENETICS, 2013, 14 : 1 - 34