In-Cell NMR and EPR Spectroscopy of Biomacromolecules

被引:73
作者
Haensel, Robert [1 ,2 ]
Luh, Laura M. [1 ,2 ]
Corbeski, Ivan [1 ,2 ]
Trantirek, Lukas [3 ]
Doetsch, Volker [1 ,2 ]
机构
[1] Goethe Univ Frankfurt, Inst Biophys Chem, D-60438 Frankfurt, Germany
[2] Goethe Univ Frankfurt, Ctr Biomol Magnet Resonance, D-60438 Frankfurt, Germany
[3] Masaryk Univ, Cent European Inst Technol, Brno 62500, Czech Republic
关键词
molecular crowding; G-quadruplexes; in-cell EPR spectroscopy; in-cell NMR spectroscopy; intrinsically disordered proteins; MAGNETIC-RESONANCE-SPECTROSCOPY; XENOPUS-LAEVIS OOCYTES; ELECTRON-PARAMAGNETIC-RESONANCE; PROTEIN-PROTEIN INTERACTIONS; HUMAN TELOMERIC DNA; DISTANCE MEASUREMENTS; ESCHERICHIA-COLI; LIVING CELLS; F-19; NMR; PHYSIOLOGICAL CONDITIONS;
D O I
10.1002/anie.201311320
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The dream of cell biologists is to be able to watch biological macromolecules perform their duties in the intracellular environment of live cells. Ideally, the observation of both the location and the conformation of these macromolecules with biophysical techniques is desired. The development of many fluorescence techniques, including super-resolution fluorescence microscopy, has significantly enhanced our ability to spot proteins and other molecules in the crowded cellular environment. However, the observation of their structure and conformational changes while they attend their business is still very challenging. In principle, NMR and EPR spectroscopy can be used to investigate the conformation and dynamics of biological macromolecules in living cells. The development of in-cell magnetic resonance techniques has demonstrated the feasibility of this approach. Herein we review the different techniques with a focus on liquid-state in-cell NMR spectroscopy, provide an overview of applications, and discuss the challenges that lie ahead.
引用
收藏
页码:10300 / 10314
页数:15
相关论文
共 115 条
[1]   NMR spectroscopy of G-quadruplexes [J].
Adrian, Michael ;
Heddi, Brahim ;
Anh Tuan Phan .
METHODS, 2012, 57 (01) :11-24
[2]   Multi-phosphorylation of the Intrinsically Disordered Unique Domain of c-Src Studied by In-Cell and Real-Time NMR Spectroscopy [J].
Amata, Irene ;
Maffei, Mariano ;
Igea, Ana ;
Gay, Marina ;
Vilaseca, Marta ;
Nebreda, Angel R. ;
Pons, Miquel .
CHEMBIOCHEM, 2013, 14 (14) :1820-1827
[3]  
[Anonymous], 2011, Angew. Chem, DOI DOI 10.1002/ANGE.201100886
[4]   MetJ repressor interactions with DNA probed by in-cell NMR [J].
Augustus, Anne M. ;
Reardon, Patrick N. ;
Spicer, Leonard D. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (13) :5065-5069
[5]   Site-directed spin-labeling of nucleotides and the use of in-cell EPR to determine long-range distances in a biologically relevant environment [J].
Azarkh, Mykhailo ;
Singh, Vijay ;
Oklre, Oliver ;
Seemann, Isabelle T. ;
Dietrich, Daniel R. ;
Hartig, Joerg S. ;
Drescher, Malte .
NATURE PROTOCOLS, 2013, 8 (01) :131-147
[6]   Evaluation of spin labels for in-cell EPR by analysis of nitroxide reduction in cell extract of Xenopus laevis oocytes [J].
Azarkh, Mykhailo ;
Okle, Oliver ;
Eyring, Philipp ;
Dietrich, Daniel R. ;
Drescher, Malte .
JOURNAL OF MAGNETIC RESONANCE, 2011, 212 (02) :450-454
[7]   Long-Range Distance Determination in a DNA Model System inside Xenopus laevis Oocytes by In-Cell Spin-Label EPR [J].
Azarkh, Mykhailo ;
Okle, Oliver ;
Singh, Vijay ;
Seemann, Isabelle T. ;
Hartig, Joerg S. ;
Dietrich, Daniel R. ;
Drescher, Malte .
CHEMBIOCHEM, 2011, 12 (13) :1992-1995
[8]  
Bai YW, 1995, METHOD ENZYMOL, V259, P344
[9]  
Banci L, 2013, NAT CHEM BIOL, V9, P297, DOI [10.1038/NCHEMBIO.1202, 10.1038/nchembio.1202]
[10]   In-cell NMR in E. coli to Monitor Maturation Steps of hSOD1 [J].
Banci, Lucia ;
Barbieri, Letizia ;
Bertini, Ivano ;
Cantini, Francesca ;
Luchinat, Enrico .
PLOS ONE, 2011, 6 (08)