Structure of pig heart citrate synthase at 1.78 Å resolution

被引:14
作者
Larson, Steven B. [1 ]
Day, John S. [1 ]
Nguyen, Chieugiang [2 ]
Cudney, Robert [2 ]
McPherson, Alexander [1 ]
机构
[1] Univ Calif Irvine, Dept Mol Biol & Biochem, Irvine, CA 92697 USA
[2] Hampton Res, Aliso Viejo, CA 92656 USA
来源
ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS | 2009年 / 65卷
关键词
REFINEMENT; STRATEGY; MODEL;
D O I
10.1107/S1744309109008343
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Pig heart citrate synthase was crystallized from a small-molecule cocktail containing cystamine dihydrochloride, aspartame and benzamidine hydrochloride. The structure was refined to an R factor of 0.179 (R-free = 0.222) using synchrotron data to a resolution of 1.78 angstrom. The model includes the full-length protein, a chloride ion, a sulfate ion, 305 water molecules and an unexpected moiety attached through a disulfide linkage to Cys184, which was modeled as a half-cystamine molecule generated by disulfide exchange with the cystamine in the small-molecule cocktail.
引用
收藏
页码:430 / 434
页数:5
相关论文
共 15 条
[1]   THE CCP4 SUITE - PROGRAMS FOR PROTEIN CRYSTALLOGRAPHY [J].
BAILEY, S .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 :760-763
[2]   The Protein Data Bank [J].
Berman, HM ;
Westbrook, J ;
Feng, Z ;
Gilliland, G ;
Bhat, TN ;
Weissig, H ;
Shindyalov, IN ;
Bourne, PE .
NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :235-242
[3]   Crystallography & NMR system:: A new software suite for macromolecular structure determination [J].
Brunger, AT ;
Adams, PD ;
Clore, GM ;
DeLano, WL ;
Gros, P ;
Grosse-Kunstleve, RW ;
Jiang, JS ;
Kuszewski, J ;
Nilges, M ;
Pannu, NS ;
Read, RJ ;
Rice, LM ;
Simonson, T ;
Warren, GL .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1998, 54 :905-921
[4]  
DeLano W.L., 2002, PYMOL MOL VISUALIZAT
[5]   Coot:: model-building tools for molecular graphics [J].
Emsley, P ;
Cowtan, K .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2004, 60 :2126-2132
[6]  
JONES TA, 1994, O MANUAL V 5 10
[7]   Progress in the development of an alternative approach to macromolecular crystallization [J].
Larson, S. B. ;
Day, J. S. ;
Nguyen, C. ;
Cudney, R. ;
McPherson, A. .
CRYSTAL GROWTH & DESIGN, 2008, 8 (08) :3038-3052
[8]   A novel strategy for the crystallization of proteins: X-ray diffraction validation [J].
Larson, Steven B. ;
Day, John S. ;
Cudney, Robert ;
McPherson, Alexander .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2007, 63 :310-318
[9]   PROCHECK - A PROGRAM TO CHECK THE STEREOCHEMICAL QUALITY OF PROTEIN STRUCTURES [J].
LASKOWSKI, RA ;
MACARTHUR, MW ;
MOSS, DS ;
THORNTON, JM .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1993, 26 :283-291
[10]   Searching for silver bullets: An alternative strategy for crystallizing macromolecules [J].
McPherson, Alexander ;
Cudney, Bob .
JOURNAL OF STRUCTURAL BIOLOGY, 2006, 156 (03) :387-406