Standardization in synthetic biology: an engineering discipline coming of age

被引:51
|
作者
Decoene, Thomas [1 ]
De Paepe, Brecht [1 ]
Maertens, Jo [1 ]
Coussement, Pieter [1 ]
Peters, Gert [1 ]
De Maeseneire, Sofie L. [2 ]
De Mey, Marjan [1 ]
机构
[1] Univ Ghent, Ctr Synthet Biol, Coupure Links 653, B-9000 Ghent, Belgium
[2] Univ Ghent, InBio Be, Ctr Ind Biotechnol & Biocatalysis, Ghent, Belgium
关键词
Standardization; biological parts; part characterization; synthetic biology; data management; forward engineering; HETEROLOGOUS GENE-EXPRESSION; ESCHERICHIA-COLI PROMOTERS; GREEN FLUORESCENT PROTEIN; RIBOSOME BINDING-SITES; SACCHAROMYCES-CEREVISIAE; MINIMUM INFORMATION; AUTOMATED DESIGN; ASSEMBLY METHOD; REAL-TIME; TRANSCRIPTION;
D O I
10.1080/07388551.2017.1380600
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Background: Leaping DNA read-and-write technologies, and extensive automation and miniaturization are radically transforming the field of biological experimentation by providing the tools that enable the cost-effective high-throughput required to address the enormous complexity of biological systems. However, standardization of the synthetic biology workflow has not kept abreast with dwindling technical and resource constraints, leading, for example, to the collection of multi-level and multi-omics large data sets that end up disconnected or remain under- or even unexploited.Purpose: In this contribution, we critically evaluate the various efforts, and the (limited) success thereof, in order to introduce standards for defining, designing, assembling, characterizing, and sharing synthetic biology parts. The causes for this success or the lack thereof, as well as possible solutions to overcome these, are discussed.Conclusion: Akin to other engineering disciplines, extensive standardization will undoubtedly speed-up and reduce the cost of bioprocess development. In this respect, further implementation of synthetic biology standards will be crucial for the field in order to redeem its promise, i.e. to enable predictable forward engineering.
引用
收藏
页码:647 / 656
页数:10
相关论文
共 50 条
  • [1] Synthetic biology: making biology into an engineering discipline
    Schyfter, Pablo
    Frow, Emma
    Calvert, Jane
    ENGINEERING STUDIES, 2013, 5 (01) : 1 - 5
  • [2] Synthetic Biology: An Emerging Engineering Discipline
    Cheng, Allen A.
    Lu, Timothy K.
    ANNUAL REVIEW OF BIOMEDICAL ENGINEERING, VOL 14, 2012, 14 : 155 - 178
  • [3] Synthetic biology: new engineering rules for an emerging discipline
    Andrianantoandro, Ernesto
    Basu, Subhayu
    Karig, David K.
    Weiss, Ron
    MOLECULAR SYSTEMS BIOLOGY, 2006, 2 (1) : 2006.0028
  • [4] Sensitivity analysis: A discipline coming of age
    Saltelli, Andrea
    Jakeman, Anthony
    Razavi, Saman
    Wu, Qiongli
    ENVIRONMENTAL MODELLING & SOFTWARE, 2021, 146
  • [5] Discipline-building in synthetic biology
    Vincent, Bernadette Bensaude
    STUDIES IN HISTORY AND PHILOSOPHY OF SCIENCE PART C-STUDIES IN HISTORY AND PHILOSOPHY OF BIOLOGICAL AND BIOMEDIAL SCIENCES, 2013, 44 (02): : 122 - 129
  • [6] Phage biology: Coming of age
    Schnaitman, CA
    SCIENCE, 2002, 298 (5602) : 2329 - 2329
  • [7] Unstructural biology coming of age
    Tompa, Peter
    CURRENT OPINION IN STRUCTURAL BIOLOGY, 2011, 21 (03) : 419 - 425
  • [8] Engineering T cells to eradicate tumors in the age of synthetic biology
    Greenberg, Philip D.
    Anderson, Kristin G.
    Egan, Dan
    Hingorani, Sunil R.
    Oda, Shannon K.
    Perret, Rachel
    Schmitt, Tom M.
    Stromnes, Ingunn M.
    Schmidt, Leah
    Chapuis, Aude G.
    CANCER IMMUNOLOGY RESEARCH, 2018, 6 (09)
  • [9] Standardization for natural product synthetic biology
    Zhao, Huimin
    Medema, Marnix H.
    NATURAL PRODUCT REPORTS, 2016, 33 (08) : 920 - 924
  • [10] Impact cratering: a young discipline coming of age
    Reimold, WU
    SOUTH AFRICAN JOURNAL OF SCIENCE, 2003, 99 (7-8) : 307 - 308