Update and Potential Opportunities in CBP [Cyclic Adenosine Monophosphate (cAMP) Response Element-Binding Protein (CREB)-Binding Protein] Research Using Computational Techniques

被引:6
作者
Akinsiku, Oluwayimika E. [1 ]
Soremekun, Opeyemi S. [1 ]
Soliman, Mahmoud E. S. [1 ]
机构
[1] Univ KwaZulu Natal, Sch Hlth Sci, Mol Biocomputat & Drug Design Lab, Westville Campus, ZA-4001 Durban, South Africa
基金
新加坡国家研究基金会;
关键词
CREB; Molecular dynamic simulation; CREB inhibitors; Bromodomains; MOLECULAR-DYNAMICS SIMULATIONS; E1A-ASSOCIATED PROTEIN; CBP/P300; BROMODOMAIN; DOCKING; CREB; LIGAND; ACETYLATION; COACTIVATOR; COMPLEX; P300;
D O I
10.1007/s10930-020-09951-8
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
CBP [cyclic adenosine monophosphate (cAMP) response element-binding protein (CREB)-binding protein] is one of the most researched proteins for its therapeutic function. Several studies have identified its vast functions and interactions with other transcription factors to initiate cellular signals of survival. In cancer and other diseases such as Alzheimer's, Rubinstein-taybi syndrome, and inflammatory diseases, CBP has been implicated and hence an attractive target in drug design and development. In this review, we explore the various computational techniques that have been used in CBP research, furthermore we identified computational gaps that could be explored to facilitate the development of highly therapeutic CBP inhibitors.
引用
收藏
页码:19 / 27
页数:9
相关论文
共 75 条
[1]   Histone acetyltransferase activity of CBP is controlled by cycle-dependent kinases and oncoprotein E1A [J].
Ait-Si-Ali, S ;
Ramirez, S ;
Barre, FX ;
Dkhissi, F ;
Magnaghi-Jaulin, L ;
Girault, JA ;
Robin, P ;
Knibiehler, M ;
Pritchard, LL ;
Ducommun, B ;
Trouche, D ;
Harel-Bellan, A .
NATURE, 1998, 396 (6707) :184-186
[2]   Exploring the Role of Asp1116 in Selective Drug Targeting of CREB-cAMP- Responsive Element-binding Protein Implicated in Prostate Cancer [J].
Akinsiku, Oluwayimika E. ;
Soremekun, Opeyemi S. ;
Olotu, Fisayo A. ;
Soliman, Mahmoud E. S. .
COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING, 2020, 23 (03) :178-184
[3]   Gabedit-A Graphical User Interface for Computational Chemistry Softwares [J].
Allouche, Abdul-Rahman .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2011, 32 (01) :174-182
[4]   Combining docking and molecular dynamic simulations in drug design [J].
Alonso, Hernan ;
Bliznyuk, Andrey A. ;
Gready, Jill E. .
MEDICINAL RESEARCH REVIEWS, 2006, 26 (05) :531-568
[5]   CBP/p300 inhibitor C646 prevents high glucose exposure induced neuroepithelial cell proliferation [J].
Bai, Baoling ;
Zhang, Qin ;
Wan, Chunlei ;
Li, Dan ;
Zhang, Ting ;
Li, Huili .
BIRTH DEFECTS RESEARCH, 2018, 110 (14) :1118-1128
[6]   Exome sequencing identifies recurrent SPOP, FOXA1 and MED12 mutations in prostate cancer [J].
Barbieri, Christopher E. ;
Baca, Sylvan C. ;
Lawrence, Michael S. ;
Demichelis, Francesca ;
Blattner, Mirjam ;
Theurillat, Jean-Philippe ;
White, Thomas A. ;
Stojanov, Petar ;
Van Allen, Eliezer ;
Stransky, Nicolas ;
Nickerson, Elizabeth ;
Chae, Sung-Suk ;
Boysen, Gunther ;
Auclair, Daniel ;
Onofrio, Robert C. ;
Park, Kyung ;
Kitabayashi, Naoki ;
MacDonald, Theresa Y. ;
Sheikh, Karen ;
Vuong, Terry ;
Guiducci, Candace ;
Cibulskis, Kristian ;
Sivachenko, Andrey ;
Carter, Scott L. ;
Saksena, Gordon ;
Voet, Douglas ;
Hussain, Wasay M. ;
Ramos, Alex H. ;
Winckler, Wendy ;
Redman, Michelle C. ;
Ardlie, Kristin ;
Tewari, Ashutosh K. ;
Mosquera, Juan Miguel ;
Rupp, Niels ;
Wild, Peter J. ;
Moch, Holger ;
Morrissey, Colm ;
Nelson, Peter S. ;
Kantoff, Philip W. ;
Gabriel, Stacey B. ;
Golub, Todd R. ;
Meyerson, Matthew ;
Lander, Eric S. ;
Getz, Gad ;
Rubin, Mark A. ;
Garraway, Levi A. .
NATURE GENETICS, 2012, 44 (06) :685-U107
[7]   Drug-like annotation and duplicate analysis of a 23-supplier chemical database totalling 2.7 million compounds [J].
Baurin, N ;
Baker, R ;
Richardson, C ;
Chen, I ;
Foloppe, N ;
Potter, A ;
Jordan, A ;
Roughley, S ;
Parratt, M ;
Greaney, P ;
Morley, D ;
Hubbard, RE .
JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES, 2004, 44 (02) :643-651
[8]   Functional role of p35srj, a novel p300/CBP binding protein, during transactivation by HIF-1 [J].
Bhattacharya, S ;
Michels, CL ;
Leung, MK ;
Arany, ZP ;
Kung, AL ;
Livingston, DM .
GENES & DEVELOPMENT, 1999, 13 (01) :64-75
[9]   Activating transcription factor 1 and CREB are important for cell survival during early mouse development [J].
Bleckmann, SC ;
Blendy, JA ;
Rudolph, D ;
Monaghan, AP ;
Schmid, W ;
Schütz, G .
MOLECULAR AND CELLULAR BIOLOGY, 2002, 22 (06) :1919-1925
[10]   PROTEIN-KINASE-A-DEPENDENT ACTIVATOR IN TRANSCRIPTION FACTOR CREB REVEALS NEW ROLE FOR CREM REPRESSORS [J].
BRINDLE, P ;
LINKE, S ;
MONTMINY, M .
NATURE, 1993, 364 (6440) :821-824